Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I19
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    42   5e-05
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.7  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    27   2.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   4.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.7  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   6.2  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   6.2  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
 Frame = +2

Query: 206 MPKCVLNCCLTANQGKYSYDPVSKMLLWDIGRIELPKLPNIKGSVSVVSGADTTG----A 373
           +P  V+      N+GK  Y+P   ++ W I R  L +   I    + V  ++TT     A
Sbjct: 338 VPTNVVKANPRVNRGKAGYEPSENIINWKIPRF-LGETELI--FYAEVELSNTTNQQIWA 394

Query: 374 SPSINVHFTIPQLAVSGLRVSRL---DMYGAKYKPFKGVKYVTKAGKFHVRM 520
            P I++ F I     SGL V  L   +   +KYK  K V+Y T+AG   +R+
Sbjct: 395 KPPISLDFNILMFTSSGLHVQYLRVSEPSNSKYKSIKWVRYSTRAGTCEIRI 446


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
 Frame = +2

Query: 191 ALEXCMPKCVLNCCLTANQGKYSYD-PVSKMLLWDIGRIELPK-LPNIKGSVSVVSGADT 364
           +++ C+   + N  +  + G Y  D  +    +  IG+   P  + NI  ++ + S  D 
Sbjct: 329 SMDECLDTVITNAVIIDHTGIYKADIGIKNGYIVGIGKAGNPDTMDNIGENMVIGSSTDV 388

Query: 365 TGASPSI--------NVHFTIPQLAVSGLRVSRLDMYGAKYKPFKGVKYVT 493
             A   I        +VHF  PQ     L      MYG    P  G    T
Sbjct: 389 ISAENKIVTYGGMDSHVHFICPQQIEEALASGITTMYGGGTGPSTGTNATT 439


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 96  VIACHXGRMGLRXAXPSLLDQSXPWGGR*KMLHWXFACRSVF 221
           +I+C    +G R     L      + G   +LHW   CRS+F
Sbjct: 394 IISCLSFPVGWRTLAKDLFKLLPVYTGVPLLLHWCINCRSIF 435


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 263 DPVSKMLLWDIGRIELPKLPNIKGSVSV---VSGADTTGASPS 382
           + + + L  DIGR+EL K  N + SV +   V G D    SP+
Sbjct: 17  ESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPA 59


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 RKCCIGXLHAEVCSKLLSNSESREIF 258
           +KCC G L   +C KL +  E++ ++
Sbjct: 556 KKCCDGILSGGLCKKLKNGKENQWVW 581


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 490  HESGQVPRQDVIRGXRSRTVDTMVRKLVNKK 582
            H  GQV    VIR     T++  ++KL N K
Sbjct: 1034 HRVGQVREVTVIRLITDNTIEEYIQKLANTK 1064


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 504 LPAFVTYLTPLNGLYLAPYMSRRLTLRP 421
           LP  +T +TP   LYL+ Y+  +   +P
Sbjct: 50  LPISLTLITPATCLYLSTYVEAKRRFKP 77


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 439 AAHSETADRQLRNREMNVDARTGARRISSRYHRHAPFNIRQFG*FYTSYIPKQHLA 272
           AAH +   RQL       D R  AR +++RY+ H P   R+      +Y P+   A
Sbjct: 79  AAHDDPVQRQLEE-----DERC-ARELANRYNSHRPERRRKTNNDRRNYPPQNRTA 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,107
Number of Sequences: 5004
Number of extensions: 40229
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)