Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I19
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41023-4|AAA82343.2|  414|Caenorhabditis elegans Adaptin, mu/med...   181   3e-46
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    42   4e-04
Z73425-3|CAA97785.1|  451|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF067943-5|AAC17663.1|  161|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U41023-4|AAA82343.2|  414|Caenorhabditis elegans Adaptin, mu/medium
           chain (clathrinassociated complex) protein 3 protein.
          Length = 414

 Score =  181 bits (441), Expect = 3e-46
 Identities = 90/165 (54%), Positives = 119/165 (72%)
 Frame = +2

Query: 23  PTGHFRLLSSHLGSQSVVALPLSVRHRLPLXSXGAQGRXALTVGPKQXMGRXLENVALEX 202
           P G+FRLLS H+ +Q++VA+P+ VR  + L      G+  LTVGPK  MG+ LE+V LE 
Sbjct: 253 PDGNFRLLSYHIAAQNMVAIPIYVRQVISLKPNA--GKLDLTVGPKLSMGKVLEDVVLEI 310

Query: 203 CMPKCVLNCCLTANQGKYSYDPVSKMLLWDIGRIELPKLPNIKGSVSVVSGADTTGASPS 382
            MPKCV NC L A+ G+ ++DP +K+L W IG+IE+ K   +KGSV+ VSG  T   +P 
Sbjct: 311 TMPKCVQNCNLVASHGRIAFDPTTKLLQWTIGKIEVGKPSTLKGSVA-VSGT-TVAENPP 368

Query: 383 INVHFTIPQLAVSGLRVSRLDMYGAKYKPFKGVKYVTKAGKFHVR 517
           I++ F I QL +SGL+V+RLDMYG KYKPFKGVKY+TKAGKF +R
Sbjct: 369 ISLKFKINQLVLSGLKVNRLDMYGEKYKPFKGVKYITKAGKFTIR 413


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +2

Query: 248 GKYSYDPVSKMLLWDIGRIELPKLPNIKGSVSVVS-GADTTGASPSINVHFTIPQLAVSG 424
           G   Y P    ++W I      +   ++ S  + S G++     P INV F IP    SG
Sbjct: 333 GTAKYVPELNAIVWSIRSFPGGREYIMRSSFMLPSIGSEELEGRPPINVKFEIPYYTTSG 392

Query: 425 LRVSRLDMY-GAKYKPFKGVKYVTKAGKFHVRM 520
           L+V  L +   + Y+    V+YVT+ G + +RM
Sbjct: 393 LQVRYLKIIEKSGYQALPWVRYVTQNGDYQMRM 425


>Z73425-3|CAA97785.1|  451|Caenorhabditis elegans Hypothetical
           protein F12F6.7 protein.
          Length = 451

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 206 MPKCVLNCCL--TANQGKYSYDPVSKMLLWDIGRIELPKLPNIKGSVSVVSGADTTG 370
           M +C   CC+      GK     V++ L+W    +++PK   + G+++ VSG D TG
Sbjct: 143 MDECATGCCVGVLGKLGKEGVFHVNR-LVWP--SVKVPKKVAVDGTIAFVSGLDLTG 196


>Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical
           protein T01B4.1 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 506 FHVRM*SEVXGREPWTQWFVNL 571
           FH+++ S    +E W QWFV +
Sbjct: 5   FHIKIISRQRSQETWGQWFVRV 26


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 293  IGRIELPKLPNIKGSVSVVSGADTTGASPSINVHFTIP 406
            +G IE P L     SVS+VS  D     PS+ +   +P
Sbjct: 960  VGVIETPILEKNSSSVSLVSANDNAPQLPSLPLPLPVP 997


>AF067943-5|AAC17663.1|  161|Caenorhabditis elegans Hypothetical
           protein F59B1.2 protein.
          Length = 161

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 508 ELARFRDVLDAFEWLVLGAVHVQAAHSETADRQ 410
           ELA  +  LDA    V+ A H QA H E  D Q
Sbjct: 129 ELASAQAALDAENAPVVNAHHAQAQHVEPVDNQ 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,325
Number of Sequences: 27780
Number of extensions: 240271
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)