Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I19
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 302 IELPKLPNIKGSVSVVSGADTTGASPSINVHFTIPQLAVSGLRVSRLDMYG 454
           + +  LP+I+    +VSG+ T G     +     P   +S  RV+  + YG
Sbjct: 375 LRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPPSFRIS--RVAAYNTYG 423


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 415 RQLRNREMNVDARTGARRISSRYHRHA 335
           +QLRN +  +D R+  +    +Y R A
Sbjct: 16  KQLRNEDNKIDLRSRTKEERLQYRREA 42


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 86   EGEPQRFVSRDGTTATGSD--QSGGMTXAG 3
            EG   + V  DG T++GSD   S G   AG
Sbjct: 1054 EGFETKLVLEDGITSSGSDSGSSNGSWTAG 1083


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 99  IACHXGRMGLRXAXPSLLDQSXP 167
           +AC  G +G+    PSL D   P
Sbjct: 491 LACTAGTLGIIFQAPSLYDTREP 513


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 474 LNGLYLAPYMSRRLTLRPLTANCGI 400
           L+G+ L   ++  L LRP    CGI
Sbjct: 699 LSGILLCYLVTFALVLRPTDIVCGI 723


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,828
Number of Sequences: 438
Number of extensions: 2880
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)