Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I17
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    50   3e-07
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    50   5e-07
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    30   0.44 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   1.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   5.4  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   9.4  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.4  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +3

Query: 525 DSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILCL 704
           +++++     +++YNVLAQ  +    + +   S   LKWK+RSR L  E+   SP + C+
Sbjct: 113 ETEKSALDITIMTYNVLAQTNIRRSMFPH---SGEALKWKNRSRMLANELTYYSPTLGCM 169

Query: 705 QEVQLSHLETFYSK-FENIGYQ 767
           QEV    +  FY K    +GY+
Sbjct: 170 QEVDAEFVPNFYKKLLGGLGYE 191


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +3

Query: 519 KTDSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDIL 698
           K  +     +F ++SYNVL +       Y Y       L W +R   + QE+   + DI+
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA--LSWSYRKDLIMQELGGYNADII 383

Query: 699 CLQEVQLSHLETFYSKFENI-GYQGVFKXKT 788
           CLQEV + + +TF++   ++ GY+GV   K+
Sbjct: 384 CLQEVDVENYDTFFAPQMSLKGYKGVHFPKS 414


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 303 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 455
           S +S++      ES   DN +S   +   S+SS ED+       DSE   S
Sbjct: 162 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 212



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 303 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 455
           S +S++      ES   DN +S   +   S+SS ED+       DSE   S
Sbjct: 216 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 266



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 303 SGASTTKGQMSD---ESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 455
           SG+S+ +   S    ES   DN +S   +   S+SS ED+       DSE   S
Sbjct: 105 SGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 158


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 315 TTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQ 428
           +T G +S  S      +SF GT  +S SS E+T+   Q
Sbjct: 523 STSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQ 560


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 384  EVSDS-SGEDTSIVEQKYDSEDAKSE-HHRRPTK 479
            EV D  SGED   +E+K   EDAK +    RP+K
Sbjct: 982  EVEDEESGEDWDELERKARQEDAKHDAFEERPSK 1015


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 633 LKWKHRSRRLYQEIRRLSPDILCLQEVQLSHLETFYSKFEN 755
           LK  ++ +    +I++L  ++L LQ +    L  FYS+FE+
Sbjct: 58  LKCINKKKHDEHKIKKLRNEVLLLQSLNHPLLCKFYSEFED 98


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 253 RPVCKHVALAKH*GKHDFFLLKYANFLTCAPQYVLSVTIFN 131
           +P  K V      G  D FL+KY + +     Y L+ T+F+
Sbjct: 66  KPSYKQVNWIDSQGLKDTFLVKYGDLINIQDPYNLNKTLFS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,525
Number of Sequences: 5004
Number of extensions: 63709
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)