Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_I17
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 70 2e-12
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 67 1e-11
05_04_0171 - 18701946-18702242,18702621-18702768,18703665-187037... 64 9e-11
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 64 9e-11
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 55 7e-08
05_05_0325 + 24109469-24109665,24110284-24110400,24110497-241109... 32 0.60
11_06_0291 + 22008412-22012284 28 7.4
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 28 7.4
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 9.8
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 70.1 bits (164), Expect = 2e-12
Identities = 37/99 (37%), Positives = 52/99 (52%)
Frame = +3
Query: 495 RTWETVGKKTDSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEI 674
R W + + SD ++SYN+LA YHP LY+D ++W R R + +EI
Sbjct: 76 RRWVLAEEASTSDGDACT--IMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREI 133
Query: 675 RRLSPDILCLQEVQLSHLETFYSKFENIGYQGVFKXKTG 791
R PD++CLQEV ++ EN GYQ FK +TG
Sbjct: 134 RHWDPDLVCLQEV--DRFRDIATEMENRGYQSRFKGRTG 170
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 525 DSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILCL 704
DS + F V+SYN+LA Y Y C L W +R + L +EI DI+CL
Sbjct: 246 DSQTSFGTFSVLSYNILADAYATSDAYSY--CPTWALSWTYRRQNLMREIIGYHADIICL 303
Query: 705 QEVQLSHLETFYS-KFENIGYQGVFKXKT 788
QEVQL+H E F+S + + GYQ ++K +T
Sbjct: 304 QEVQLNHFEDFFSPELDKHGYQALYKKRT 332
>05_04_0171 -
18701946-18702242,18702621-18702768,18703665-18703786,
18704360-18704429,18704922-18704971,18705107-18705156,
18705296-18705359
Length = 266
Score = 64.5 bits (150), Expect = 9e-11
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Frame = +3
Query: 474 TKIPLNFRTWETVGKKTDSDETTFRFKVVSYNVLAQYLLE--YHPYLYIDCSPRNLKWKH 647
T+ +F T ++D+ ++F++VSYN+LAQ ++ + P+ C LKWK
Sbjct: 3 TQAQPSFAPLPTAQSESDAGAAGYQFRLVSYNILAQVYVKSAFFPHSPSAC----LKWKT 58
Query: 648 RSRRLYQEIRRLSPDILCLQEVQLSHLETFYSK-FENIGYQGVFKXKTG 791
RS+ + E++ D++C+QE L +TFY K EN GY ++ ++G
Sbjct: 59 RSKAVLSELKSFEADLMCIQE--LDEYDTFYKKNMENSGYSSIYIQRSG 105
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 64.5 bits (150), Expect = 9e-11
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +3
Query: 525 DSDETTF-RFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILC 701
DS ++F F V+SYN+LA Y Y C L W +R + L +EI DI+C
Sbjct: 247 DSRNSSFGTFTVLSYNILADTYATSDTYSY--CPTWALSWPYRRQNLLREIIGYHADIIC 304
Query: 702 LQEVQLSHLETFYS-KFENIGYQGVFKXKT 788
LQEVQ +H E F++ + + GYQ +FK +T
Sbjct: 305 LQEVQSNHFEEFFAPELDKHGYQALFKKRT 334
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +3
Query: 546 RFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLYQEIRRLSPDILCLQEV 713
RFKV+SYN+LA YL + H +LY + W R +L E SPDILCLQ +
Sbjct: 191 RFKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQVI 246
>05_05_0325 +
24109469-24109665,24110284-24110400,24110497-24110914,
24110997-24111416
Length = 383
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 303 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIV 422
+GA G D+++ + NH S GG SDS+G S V
Sbjct: 344 TGAGEDDGDGDDDAERSKNHRSSGGVRSSSDSNGHGASAV 383
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +3
Query: 336 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRP 473
+E + T+ GG + G+D +++ YD E+ + E P
Sbjct: 486 EEREGTEEKQVGGGEKKEEKEDGDDDGVIDDNYDEEEEEEEEDDDP 531
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 637 SGNTDLDVSTKKFADCHLTYCASKKFNCRTLKRSILNSKTSGTKVSSN 780
S + +DV T+ D +Y C T K+SI+NS + + V N
Sbjct: 466 SDSKSIDV-TRNIGDKPDSYAERADAKCNTSKKSIINSNSENSNVQPN 512
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 336 DESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRPTKIPLNFRTWETVG 515
DE DNH+ F G D+ S +EQ+ +D SE R+ + +T G
Sbjct: 308 DEGSSGDNHSGFSG--PPRDTQTPTASGLEQEDGRKDLVSESARQDIPDEFHDGMLKTTG 365
Query: 516 KKTDSDETTFRFKVV 560
+ +D + VV
Sbjct: 366 SSSSNDVELMKDNVV 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,018,228
Number of Sequences: 37544
Number of extensions: 398560
Number of successful extensions: 1140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -