Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I07
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    29   0.31 
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   1.7  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   2.2  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   3.8  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   8.9  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   8.9  

>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 206 GKYLGVSKDGVVVGRSDAVGPMEQW 280
           GKY+  SK G +    +AVG  EQW
Sbjct: 107 GKYMSCSKSGDLYCTQEAVGSQEQW 131


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 421 FITPYYTVLILTGTDTL 371
           F+ PY+T+L+L  TDT+
Sbjct: 315 FVAPYWTLLLLKDTDTI 331


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 200 RYGKYLGVSKDGVVVGRSDAVGPMEQWEPVWQDGKTAILSSLNKFMSVTPDD 355
           +YGK++G+S + ++  R+D    M++     +  K  I S + +   +TP +
Sbjct: 102 KYGKHIGLSSNWLIADRNDTQAIMKRLLDSLKKAKNPIASGI-RGQELTPQN 152


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 433 YFLGFITPYYTVLILT 386
           YFLG+++ YY V+I T
Sbjct: 208 YFLGYLSMYYEVVIFT 223


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 296 DGKTAILSSLNKFMSVTPDDDSVIAKSVSAGENEYCI 406
           DGK   L ++N+      +D  + +K      NEYC+
Sbjct: 127 DGKEDDLQNVNEPQDAYSNDHDIQSKDTELLGNEYCL 163


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -3

Query: 103 YCIYICN*I----TRL-LIFFKGFYDLVTKTFGSSHRPA 2
           Y I IC  I    T L L+F  GFY L  K F   + PA
Sbjct: 360 YVISICEHIGEEETELFLVFISGFYGLCKKFFSIPNGPA 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,045
Number of Sequences: 5004
Number of extensions: 40247
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)