Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I07
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0103 + 10774541-10775464                                         29   2.2  
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    28   5.1  
02_03_0240 - 16739628-16740369,16740392-16740978                       28   5.1  
03_05_0344 - 23316919-23317314,23317474-23317868,23320889-233213...    27   8.9  
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443...    27   8.9  

>10_06_0103 + 10774541-10775464
          Length = 307

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 40  GRKI-P*KKLINELFSYIYKYSKIHL*FNLQDKN 138
           GR I P K L+NE F  ++K  K+HL  NL+  N
Sbjct: 249 GRCIAPDKALLNEFFDGLWKAKKLHLAENLRSLN 282


>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 451 RQHCFIYFLGFITPYYTVLIL 389
           R++C+IYFLGF  PY  ++ L
Sbjct: 354 RENCYIYFLGF-HPYKDIVFL 373


>02_03_0240 - 16739628-16740369,16740392-16740978
          Length = 442

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 202 VWKILGGFKGWSGGGQI*CSRANGTVGACLAR 297
           V  I GGFK   GGG+     A+  + A LAR
Sbjct: 250 VLDIGGGFKAGGGGGESTFQEASAVISAALAR 281


>03_05_0344 -
           23316919-23317314,23317474-23317868,23320889-23321384,
           23322346-23322366
          Length = 435

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 233 GVVVGRSDAVGPMEQWEPVWQDGKTAILSSLNKFMSVTPD 352
           G VVG S A    + W  +W     A+ S + K   + P+
Sbjct: 282 GNVVGCSSAADGRKVWSDLWSTQAKALRSEMRKIWQLPPE 321


>02_05_0261 +
           27243898-27243938,27244068-27244157,27244293-27244350,
           27244441-27244485,27244778-27244855,27244940-27245041,
           27245150-27245173
          Length = 145

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 329 KFMSVTPDDDSVIAKSVSAGENEYCIIRSNKAKEVNKA 442
           ++ +  PD+ SV A S +AGE    +    KA  V+KA
Sbjct: 50  EYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKA 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,121,826
Number of Sequences: 37544
Number of extensions: 240702
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)