Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I07
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   10.0 

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 263 GPMEQWEPVWQDGKTAILSSLNKFMSVTPDDDSVIAKSVSAGE 391
           GP   +   W +     L  L       P+   VIA SVSAGE
Sbjct: 568 GPRTTYCAFWNE----FLPKLKGIPDPXPNTCKVIASSVSAGE 606


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 185  KETNPRYGKYLGVSKDGVV 241
            K T P+ GKY    +D +V
Sbjct: 1031 KGTRPKRGKYRNYDRDSLV 1049


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 382 TDTLSYNTVIIRRY 341
           TD LSYN ++ R Y
Sbjct: 230 TDLLSYNILLRRHY 243


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 273 SIGPTASDLPTTTPSFET 220
           S+ PT +  PTT PS  T
Sbjct: 377 SLVPTTTASPTTEPSTTT 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,547
Number of Sequences: 438
Number of extensions: 2691
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)