Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I02
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.7  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.2  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   2.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.9  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.9  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 204 DLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGEC 374
           D ESI   +F S K  T++ PV+     + AP    P +S   +L   T+   E +C
Sbjct: 731 DKESIFGSLFGSKKKQTEIPPVSSSPPHNDAPPKAKP-ISAPSELP-NTTSVAEAKC 785


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 289 TGLHRPWCL 315
           TGLHRPWCL
Sbjct: 684 TGLHRPWCL 692


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 373 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 281
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 132 YPKMYKLLLIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQ-PVTQPSVADRAPSTL 308
           YP  Y    +   A++ +  +         N  F +  P + LQ P T  S   + P ++
Sbjct: 372 YPISYAAESVPRPATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVPQLPKSV 431

Query: 309 VPGVSTNDDLSCQTSD 356
            PG++   D S  +S+
Sbjct: 432 TPGLAYPHDSSMLSSN 447


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 493 LPTRDRQQIPSRPGRRP 543
           LP+R    +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 352 PTAKKGSASTITCATRPITP*SLTEQTSSI*ESAVARVHRTST 480
           P     + +T TC++RP    S    TS++ ES  +    TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 631 PNLVSPSTSPVVRKATPSGFR 569
           PN +SPST P++  +  S FR
Sbjct: 253 PNRLSPSTQPLLSNSRHSSFR 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,425
Number of Sequences: 5004
Number of extensions: 52262
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)