Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_I02
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               31   1.3  
SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)                   30   2.3  
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            30   2.3  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         29   5.4  
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  28   9.5  
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       28   9.5  

>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 423 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP-MNQGC 563
           G N   +     P   Y+ V    P  +PP  P TP+P   P +  GC
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAPKIKNGC 242


>SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)
          Length = 225

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 198 TGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLV 311
           TG +   +NQ+ T+ +P T  +PV +  + D  P+ L+
Sbjct: 118 TGMVPYTVNQVMTTGRPRTTTRPVQRQDLPDSDPAPLL 155


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 414 ITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWR 572
           +T G   I  R G G   +++D+C      R   D      E +    GCG R
Sbjct: 60  VTFGHGWISARQGEGHVQTWMDICKTGRRSRSDMDGYLQEREKVTFRHGCGQR 112


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 147  KLLLIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 296
            K + +G + S  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 1024 KFVSVGRMRSLFSQ-ADTKVLQAACNQLITSKKAPTRSQILRQIRSDERA 1072


>SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 147 KLLLIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 296
           K + +G + S  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 58  KFVSVGRMRSLFSQ-ADTEVLQAACNQLITSKKAPTRSQILRQIRSDERA 106


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +3

Query: 369 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 542
           +C++  LCN+    I  D +N         P S  +D   C   PD  PP    TP P  
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749

Query: 543 LPMNQG 560
            P   G
Sbjct: 750 YPCRTG 755


>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 808

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 189 NMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAP 299
           N  T +LES IN++  +  PP Q   ++ P  +D  P
Sbjct: 184 NFGTNNLESAINEVVPALTPP-QTNIISVPGKSDNKP 219


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 548 WQGLRPGRDGICWRSLVGSQTADVDVR-*TRATADSYIDDVCSVSDY 411
           W+GL P  DGI  RS +G      +V   TR TA       C+ SD+
Sbjct: 231 WEGLNPPADGIKIRSWLGDPDWKPEVAGKTRKTAAHPNSRFCAPSDH 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,042,082
Number of Sequences: 59808
Number of extensions: 460258
Number of successful extensions: 1454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)