Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_H23
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.7  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.2  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   3.9  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   5.1  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.1  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 176 LSTTAPSFRPYVPPYLLPDES*YAKAPTPLLLGRADELNYGRRFDNEP 33
           L T+ PS+ P   PY  P  + YAK    L     ++ N+   FDN P
Sbjct: 652 LPTSIPSYTPATHPYAGPAINAYAKL---LAKDANNKTNFQAIFDNNP 696


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/78 (20%), Positives = 34/78 (43%)
 Frame = +2

Query: 167 SSTNKATFLQISNPSPSKTWIISSLNILETSKTCYESSRYLISHRPDSPTNSSPRCRTIR 346
           S+ +++ FL+ +N SP+ +  + SLN    S + Y    +   +      N SP+    +
Sbjct: 651 SNADESQFLEYANDSPNSSESLESLNNQSYSSSPYSVFSHPPPYMGRQSLNDSPQTSDFK 710

Query: 347 ISSARSPEPRLARVSVTK 400
            S+       +  +  T+
Sbjct: 711 ASNLNDSSSNVHSIFQTR 728


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 459 IARVLVHIGHVRIRGINGSNLVTETRASRGSGERAELIRIV 337
           ++++   +G V I G+N SN+      S  +G+R + I +V
Sbjct: 159 VSKMHCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 275 SSRYLISHRPDSPTN-SSPRCRTIRISSARSPEPRL 379
           SS YL+SH P    N S  RC    +   R  +P L
Sbjct: 243 SSDYLVSHEPKDENNYSHTRCTHYFLEPIRWMQPEL 278


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 194 QISNPSPSKTWIISSLNILETSKTCYESSRYLISHRPDSPTNSSPRCRTIRISSARSPEP 373
           QI+ P  S     S LNIL +     +++  + S + D  T ++P C   +   +RSP P
Sbjct: 159 QIATPKSSA----SLLNILRSLHDEQKNTLNISSVKQDRITEANPTCE--KRKPSRSPSP 212

Query: 374 RLAR 385
            L++
Sbjct: 213 MLSK 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,919
Number of Sequences: 5004
Number of extensions: 49207
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)