Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_H23
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0055 + 12935763-12936287 30 1.3
06_01_0486 - 3455030-3455770 30 1.7
08_01_0555 - 4871996-4872652 29 3.0
03_02_0542 - 9348126-9349585,9352433-9352655 29 3.0
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 29 4.0
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 29 4.0
02_05_0271 + 27342468-27343577 29 4.0
02_02_0503 + 11008475-11008793,11009983-11010140,11011863-110121... 27 9.2
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 27 9.2
>11_04_0055 + 12935763-12936287
Length = 174
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +1
Query: 28 SEGSLSKRLP*FNSSALPNNRGV--GAFAYQ-DSSGNRYG----GTYGLKDGAVVDKQGD 186
S+G K++P + SA P+++G G+ Q D+S +G G +G++ V QGD
Sbjct: 91 SKGEDGKQVP--DGSAQPSDKGATDGSLGSQGDNSQGVHGVQGDGVHGVQGDGVHGVQGD 148
Query: 187 FPPNFQPESFQDLDYFFPEYFRNFEN 264
Q +F E+F NF++
Sbjct: 149 GAQGLQGGNFNQNGNASQEFFNNFQD 174
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 161 PSFRPYVPPYLLPDES*YAKAPTP 90
P PYVPPY+ P Y PTP
Sbjct: 106 PPTPPYVPPYIPPPTPPYVPPPTP 129
>08_01_0555 - 4871996-4872652
Length = 218
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = +1
Query: 46 KRLP*FNSSALPNNRGVGAFAYQDSSGNRYGGTYGLKDGAVVDKQGDFPPNFQPESFQDL 225
K++P + SA P+N+G + G+ G + ++ V QGD Q +
Sbjct: 97 KQIP--DGSAQPSNKGA-TDGSPGNQGDDPQGVHRVQGDGVHGVQGDGTQGPQGGNLNQN 153
Query: 226 DYFFPEYFRNFENLLREFPIFN 291
D F ++F NF++ + ++ ++N
Sbjct: 154 DNAFQDFFNNFQDRV-DYAVYN 174
>03_02_0542 - 9348126-9349585,9352433-9352655
Length = 560
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 108 VSRFIRQ*VRRYIRPERRGCRRQTRRL 188
V +R+ +R+Y RPE RG +R RRL
Sbjct: 254 VKHLVREFLRKYKRPEIRGDQRALRRL 280
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 200 SNPSPSKTWIISSLNILETSKTCYESSRYLISHRPDSPTNSSPRCRTIRISSARSPEP 373
S+PSPS + N E S Y R PD P SSP+ +T+ + + SP+P
Sbjct: 79 SSPSPSAAAKLPRGNDKEDSFIAYHLRRLF---APDDP--SSPQIQTLALPAPPSPDP 131
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 417 GINGSNLVTETRASRGSGERAELIRIVLHRGELFVGESGRWEI 289
G+NG E +RG R E + +V H GEL VG E+
Sbjct: 1382 GVNGGG--DEHPEARGRPRRPEAVVLVAHVGELLVGGDRHQEV 1422
>02_05_0271 + 27342468-27343577
Length = 369
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -1
Query: 173 STTAPSFRPYVPPYLLPDES*YAKAPTPLLLGRADELNYGRRFDNEPSEGRLIGRP 6
S++A +FRP PP P P P LLG A + +G D G L G+P
Sbjct: 53 SSSASAFRPLPPPQQQP--------PAPFLLGAAPQ-GFGDGGDGSGPHGFLQGKP 99
>02_02_0503 +
11008475-11008793,11009983-11010140,11011863-11012102,
11013502-11013757,11013846-11014057,11014413-11014453,
11014531-11014567
Length = 420
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -1
Query: 182 PCLSTTAPSFRPYVPPYLLPDES*YAKAPTPLLLG---RADELNYGRRFDNEPSEGR 21
P + AP P VP + +S A T LG RAD YGR FD GR
Sbjct: 40 PAAAAAAPRRTPLVPALFVIGDS-TADVGTNNYLGTLARADREPYGRDFDTRRPTGR 95
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 155 KTGLSSTNKATFLQISNPSPSK 220
KTG +++ + + LQ++NP P+K
Sbjct: 308 KTGTNTSKRGSHLQVTNPHPAK 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,915,850
Number of Sequences: 37544
Number of extensions: 337754
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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