Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_H23
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.46 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 167 SSTNKATFLQISNPSPSKTWIISSLNILETSKTCYESSRYLISHRPDSPTNSSPR 331
           SS N  T +Q    SP+   + SSL+    +        Y   H   SPT SSP+
Sbjct: 20  SSANPGT-IQACTTSPATASLESSLSAAAVAAAAVN---YAQQHNSPSPTGSSPQ 70


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 232 NNPSLGRTRVGNLEESRLVC 173
           +NPS+ RT + ++ +S ++C
Sbjct: 336 SNPSITRTGLSSVRDSSIIC 355


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 164 LSSTNKA---TFLQISNPSPSKTWIISSLNILETSKTCYESSRYLISHRPDSPTNSSPRC 334
           LSST  A   T  +    SP    II   N L+TSK     S   I  +PD    +    
Sbjct: 240 LSSTRTAETGTIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSICGIDSKPDYRELTEYSV 299

Query: 335 RTIRISSA 358
            ++R+ S+
Sbjct: 300 TSVRLISS 307


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 378 WPGFQSPSCFH*SP*SEHAQCE 443
           W  +  P C++ +P    AQCE
Sbjct: 213 WGYYAYPYCYNLTPNQPSAQCE 234


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 231 IIQVLEGLGLEIWRKVALFVDDSPVFQAVCTAVPI 127
           + Q   G+G  I + V L V+ SP F A    V +
Sbjct: 785 LCQASNGIGSGIGKVVQLKVNSSPYFAAPSRLVTV 819


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 231 IIQVLEGLGLEIWRKVALFVDDSPVFQAVCTAVPI 127
           + Q   G+G  I + V L V+ SP F A    V +
Sbjct: 781 LCQASNGIGSGIGKVVQLKVNSSPYFAAPSRLVTV 815


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 414  INGSNLVTETRASRGSGERAELIRIVLHRGELFVG 310
            +NG  +V     +    E  E+I  +   G+ F+G
Sbjct: 1531 VNGEKIVVSRNKAYQKVEENEIIFEIYKMGDRFIG 1565


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 8  AGR*VCLRRVRCQNVCRSLIHQLYPT 85
          AG+  CLR    Q+   S+ HQL  T
Sbjct: 7  AGQHYCLRWNNYQSNMTSVFHQLLQT 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,456
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)