Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_H21
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 125 3e-29
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 122 4e-28
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 110 1e-24
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 107 7e-24
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 35 0.057
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 5.0
01_01_0381 - 2961422-2963917 28 8.7
>07_03_0685 - 20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 125 bits (302), Expect = 3e-29
Identities = 60/113 (53%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Frame = +2
Query: 149 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 319
+ IQ FDPFA+A + + G VHVRIQQRNGRK+LTTVQGL E+ KI+
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 787
Query: 320 RACKKEFACNGTVVEHPXYGEVLQLQGDQRENICXWLTKSGLXKPEQLKVHGF 478
+ KKEF CNGTVV+ P G+V+QLQGDQR+N+ +L ++G+ K E +K+HGF
Sbjct: 788 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 122 bits (293), Expect = 4e-28
Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 3/104 (2%)
Frame = +2
Query: 176 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 346
DPFA+A + + G VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61
Query: 347 NGTVVEHPXYGEVLQLQGDQRENICXWLTKSGLXKPEQLKVHGF 478
NGTVV+ P G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 62 NGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 110 bits (264), Expect = 1e-24
Identities = 54/99 (54%), Positives = 70/99 (70%), Gaps = 3/99 (3%)
Frame = +2
Query: 149 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 319
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK+LTTVQGL EY KI+
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKIL 62
Query: 320 RACKKEFACNGTVVEHPXYGEVLQLQGDQRENICXWLTK 436
+ KKEF CNGTVV+ P G+V+QLQGDQR+N+ +L +
Sbjct: 63 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQ 101
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 107 bits (258), Expect = 7e-24
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +2
Query: 230 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPXYGEVLQLQGDQR 409
VHVR+QQRNGRKTLTTVQG+ EY+ K++R K+E CNG VVE G+++QLQGD R
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHR 557
Query: 410 ENICXWLTKSGLXKPEQLKVHGF 478
++ +L K+G+ + + +KVHGF
Sbjct: 558 NSVSDFLAKAGMVRKDNIKVHGF 580
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 35.1 bits (77), Expect = 0.057
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 251 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPXYGEVLQLQGDQRENICXW 427
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I +
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 174
Query: 428 LTKSGLXKPE 457
+T + PE
Sbjct: 175 ITDTWPDVPE 184
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 100 VVSQRFVETKRPYVQSYVHPESQHI 174
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
>01_01_0381 - 2961422-2963917
Length = 831
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 281 QGLSSEYDLKKIVRACKKEFAC-NGTVVEHPXYGEVLQL 394
Q L E DLK++ R CK C V+ P G+V+Q+
Sbjct: 751 QKLCGEADLKEVERVCKIGCWCIQEDEVDRPTMGQVVQI 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,970,671
Number of Sequences: 37544
Number of extensions: 352538
Number of successful extensions: 833
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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