Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_H21
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   129   2e-30
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  129 bits (311), Expect = 2e-30
 Identities = 63/112 (56%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
 Frame = +2

Query: 149 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR 322
           MSI NLN   P ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57

Query: 323 ACKKEFACNGTVVEHPXYGEVLQLQGDQRENICXWLTKSGLXKPEQLKVHGF 478
             KK+ +CNGT+VEHP YGEV+QL GDQR+ +  +L K G+      +VHGF
Sbjct: 58  YLKKKHSCNGTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 134 PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 280
           PTFNR  I N   FDP+  +A K +   + DGL +  + + R  + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
            C34G6.1 protein.
          Length = 1768

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 348  LHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCWIRTWTKP 223
            L  +SF+ A T+F RS  E+RP  V  + +    +  + ++P
Sbjct: 1417 LDKDSFIQAITVFIRSLVEQRPAWVSPLAKTMEEYANSESEP 1458


>AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical
           protein T06A1.4 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 107 RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 286
           ++V +   DP F  ++ Q L  FD    A++    DVQ     ++   +  R+ ++ + G
Sbjct: 83  QTVDMNCSDPGFEAIAAQYLKVFDDVITAVEEKPGDVQTACDRLQAVGKMHRQKVSGMDG 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,551
Number of Sequences: 27780
Number of extensions: 302695
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)