Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_H14
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6X709 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  
UniRef50_Q23C36 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  

>UniRef50_A6X709 Cluster: Putative uncharacterized protein; n=1;
           Ochrobactrum anthropi ATCC 49188|Rep: Putative
           uncharacterized protein - Ochrobactrum anthropi (strain
           ATCC 49188 / DSM 6882 / NCTC 12168)
          Length = 370

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 27  KSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQLRIYVSRLRRLS 206
           K S A  L   +      +V +T   +RR RC +G       ++R  +  I V+   R++
Sbjct: 20  KKSSAVPLLQNNAAHGLVHVSDTAPGIRRLRCGAG-----FRYVRFDKKAISVADRNRIA 74

Query: 207 RIQSPGLWIVRWLCC 251
           ++  P  W   W+CC
Sbjct: 75  KLAIPPAWNDVWICC 89


>UniRef50_Q23C36 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1524

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 53  SSVNFENCSKCSRNCSFCS 109
           S++N++ C KCS NC FC+
Sbjct: 812 SNLNYQTCEKCSENCKFCT 830


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,186,175
Number of Sequences: 1657284
Number of extensions: 7702339
Number of successful extensions: 24135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24112
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)