Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_H12
(665 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q95V82 Cluster: Cytochrome c oxidase subunit Va; n=2; N... 182 9e-45
UniRef50_Q94514 Cluster: Cytochrome c oxidase subunit 5A, mitoch... 159 6e-38
UniRef50_UPI0000D56796 Cluster: PREDICTED: similar to Cytochrome... 142 5e-33
UniRef50_P55954 Cluster: Cytochrome c oxidase subunit 5A, mitoch... 124 3e-27
UniRef50_P20674 Cluster: Cytochrome c oxidase subunit 5A, mitoch... 119 5e-26
UniRef50_Q4S8B4 Cluster: Chromosome undetermined SCAF14706, whol... 97 4e-19
UniRef50_Q5DBT0 Cluster: SJCHGC09063 protein; n=1; Schistosoma j... 87 5e-16
UniRef50_O61694 Cluster: Cytochrome c oxidase subunit 5A, mitoch... 86 8e-16
UniRef50_UPI0000D9BC37 Cluster: PREDICTED: similar to Cytochrome... 84 3e-15
UniRef50_Q01359 Cluster: Cytochrome c oxidase polypeptide VI, mi... 64 4e-09
UniRef50_P00427 Cluster: Cytochrome c oxidase polypeptide VI, mi... 60 5e-08
UniRef50_A1D039 Cluster: Cytochrome c oxidase subunit Va, putati... 57 4e-07
UniRef50_Q9UTF6 Cluster: Cytochrome c oxidase polypeptide VI, mi... 56 6e-07
UniRef50_A2X9I7 Cluster: Putative uncharacterized protein; n=3; ... 36 0.88
>UniRef50_Q95V82 Cluster: Cytochrome c oxidase subunit Va; n=2;
Neoptera|Rep: Cytochrome c oxidase subunit Va -
Rhyzopertha dominica (Lesser grain borer)
Length = 150
Score = 182 bits (442), Expect = 9e-45
Identities = 84/119 (70%), Positives = 94/119 (78%)
Frame = +2
Query: 155 GGPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDY 334
G VE+DE+FD RYE YFNR DIDGWE+RKGMND+CG D+VP+PKI+ AAL ACRRVNDY
Sbjct: 31 GHNVETDEQFDARYENYFNRPDIDGWEVRKGMNDICGEDVVPEPKIVIAALKACRRVNDY 90
Query: 335 ALAVRFIEACKDKCGNKVNXXXXXXXXXXXXTLTELGIDTPEELGYDKPELALXSVYHM 511
ALAVRFIEA KDKCG KV TLTELGIDTPEELGYDKPELAL ++Y +
Sbjct: 91 ALAVRFIEAIKDKCGGKVAEIYPYIIQEIRPTLTELGIDTPEELGYDKPELALQNIYEV 149
>UniRef50_Q94514 Cluster: Cytochrome c oxidase subunit 5A,
mitochondrial precursor; n=11; Neoptera|Rep: Cytochrome
c oxidase subunit 5A, mitochondrial precursor -
Drosophila melanogaster (Fruit fly)
Length = 149
Score = 159 bits (386), Expect = 6e-38
Identities = 77/116 (66%), Positives = 85/116 (73%)
Frame = +2
Query: 158 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 337
G ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP PKII+A L A RRVND A
Sbjct: 32 GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIA 91
Query: 338 LAVRFIEACKDKCGNKVNXXXXXXXXXXXXTLTELGIDTPEELGYDKPELALXSVY 505
LA+R++E CKDKCG++ TL ELGI T EELGYDKPELAL SVY
Sbjct: 92 LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIEELGYDKPELALKSVY 147
>UniRef50_UPI0000D56796 Cluster: PREDICTED: similar to Cytochrome c
oxidase polypeptide Va, mitochondrial precursor; n=2;
Tribolium castaneum|Rep: PREDICTED: similar to
Cytochrome c oxidase polypeptide Va, mitochondrial
precursor - Tribolium castaneum
Length = 152
Score = 142 bits (345), Expect = 5e-33
Identities = 65/111 (58%), Positives = 79/111 (71%)
Frame = +2
Query: 173 DEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRF 352
D++ RYE +F+R+DIDGW+IR+GMNDL G D VP+P +I AALHACRRVNDYA+ VRF
Sbjct: 41 DDDLTCRYECFFSREDIDGWDIRQGMNDLLGYDAVPEPPVIIAALHACRRVNDYAMTVRF 100
Query: 353 IEACKDKCGNKVNXXXXXXXXXXXXTLTELGIDTPEELGYDKPELALXSVY 505
+EA KD+CG+K N TL ELG D PE L Y KPEL L SV+
Sbjct: 101 LEAIKDRCGDKANEIYPYIVQEIAPTLCELGCDLPETLCYHKPELFLKSVF 151
>UniRef50_P55954 Cluster: Cytochrome c oxidase subunit 5A,
mitochondrial precursor; n=2; Caenorhabditis|Rep:
Cytochrome c oxidase subunit 5A, mitochondrial precursor
- Caenorhabditis elegans
Length = 174
Score = 124 bits (298), Expect = 3e-27
Identities = 56/105 (53%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
Frame = +2
Query: 176 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFI 355
++FDN + Y NR +IDGWE+RK +++L D++PDPK+++AAL ACRRVND+ALAVRF+
Sbjct: 42 DKFDNHFINYLNRPEIDGWEVRKALSELHDYDVIPDPKVVEAALRACRRVNDFALAVRFL 101
Query: 356 EACKDKCGNKVNXXXXXXXXXXXX--TLTELGIDTPEELGYDKPE 484
EA K KCG + N L ELGIDTPE+LGY +PE
Sbjct: 102 EAIKIKCGAQKNRDTVYAYIVKQVEPVLKELGIDTPEQLGYGEPE 146
>UniRef50_P20674 Cluster: Cytochrome c oxidase subunit 5A,
mitochondrial precursor; n=45; Eumetazoa|Rep: Cytochrome
c oxidase subunit 5A, mitochondrial precursor - Homo
sapiens (Human)
Length = 150
Score = 119 bits (287), Expect = 5e-26
Identities = 59/107 (55%), Positives = 69/107 (64%)
Frame = +2
Query: 158 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 337
G E+DEEFD R+ YFN+ DID WE+RKG+N L D+VP+PKII AAL ACRR+ND+A
Sbjct: 44 GSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFA 103
Query: 338 LAVRFIEACKDKCGNKVNXXXXXXXXXXXXTLTELGIDTPEELGYDK 478
VR +E KDK G TL ELGI TPEELG DK
Sbjct: 104 SLVRILEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPEELGLDK 149
>UniRef50_Q4S8B4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14706,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 149
Score = 96.7 bits (230), Expect = 4e-19
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +2
Query: 158 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 337
G VE++EEFD R+ YF++ DID WE+RKGMN L G DLVP+ KII +AL ACRR+ND A
Sbjct: 12 GKVETEEEFDARWVTYFSKPDIDTWELRKGMNTLIGYDLVPEAKIIDSALRACRRLNDLA 71
Query: 338 LAVRFIEACK 367
A+R +EA K
Sbjct: 72 SAIRILEAVK 81
>UniRef50_Q5DBT0 Cluster: SJCHGC09063 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09063 protein - Schistosoma
japonicum (Blood fluke)
Length = 150
Score = 86.6 bits (205), Expect = 5e-16
Identities = 46/114 (40%), Positives = 62/114 (54%)
Frame = +2
Query: 152 HGGPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVND 331
+ E E F +R+ F+ IDGW R M L D +P P+++ + L ACRR+ND
Sbjct: 33 YSNKTEPYEIFKSRFMKAFDDPKIDGWWARTWMQRLHLEDAIPPPEVVVSGLKACRRLND 92
Query: 332 YALAVRFIEACKDKCGNKVNXXXXXXXXXXXXTLTELGIDTPEELGYDKPELAL 493
ALA+RFIE+ K KC + ELG+ T E+LGYDKPELA+
Sbjct: 93 IALAIRFIESVKFKC-QACKGSWNWLSKEIEPAMKELGLPTLEQLGYDKPELAI 145
>UniRef50_O61694 Cluster: Cytochrome c oxidase subunit 5A,
mitochondrial precursor; n=1; Manduca sexta|Rep:
Cytochrome c oxidase subunit 5A, mitochondrial precursor
- Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm)
Length = 63
Score = 85.8 bits (203), Expect = 8e-16
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 59 MLKSASGAFANVLKXXXXXXXXXXXXX-XXXXHGGPVESDEEFDNRYEAYFNRKDIDGWE 235
MLKSASGA ANVLK HGGPVESDEEFD+RYEA+FNRKDIDGWE
Sbjct: 1 MLKSASGALANVLKRSLVPAARVTAVVPLRRSHGGPVESDEEFDSRYEAFFNRKDIDGWE 60
Query: 236 IRK 244
IRK
Sbjct: 61 IRK 63
>UniRef50_UPI0000D9BC37 Cluster: PREDICTED: similar to Cytochrome c
oxidase polypeptide Va, mitochondrial precursor; n=2;
Amniota|Rep: PREDICTED: similar to Cytochrome c oxidase
polypeptide Va, mitochondrial precursor - Macaca mulatta
Length = 171
Score = 83.8 bits (198), Expect = 3e-15
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Frame = +2
Query: 158 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMND-LCGMDLVPDPKIIKAALHACRRVNDY 334
G E++EEFD R+ Y N+ DID WE+ KGMN+ L DLVP+PKII AL CRR+ND+
Sbjct: 102 GSHETNEEFDARWVTYTNKPDIDAWELHKGMNNTLVSYDLVPEPKIIDVALWPCRRLNDF 161
Query: 335 ALAVRFIE 358
A AVR +E
Sbjct: 162 ASAVRILE 169
>UniRef50_Q01359 Cluster: Cytochrome c oxidase polypeptide VI,
mitochondrial precursor; n=12; Dikarya|Rep: Cytochrome c
oxidase polypeptide VI, mitochondrial precursor -
Neurospora crassa
Length = 148
Score = 63.7 bits (148), Expect = 4e-09
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = +2
Query: 167 ESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAV 346
E+ EEF RYE F+ D +E+++ +N+ DLVP P ++ AAL A RRVND+ AV
Sbjct: 46 ETFEEFTARYEKEFDAVQ-DVFELQRNLNNAFAYDLVPSPSVLAAALKAARRVNDFPTAV 104
Query: 347 RFIEACKDKCGNK 385
R E K K NK
Sbjct: 105 RVFEGIKAKVENK 117
>UniRef50_P00427 Cluster: Cytochrome c oxidase polypeptide VI,
mitochondrial precursor; n=9; Ascomycota|Rep: Cytochrome
c oxidase polypeptide VI, mitochondrial precursor -
Saccharomyces cerevisiae (Baker's yeast)
Length = 148
Score = 60.1 bits (139), Expect = 5e-08
Identities = 38/100 (38%), Positives = 51/100 (51%)
Frame = +2
Query: 167 ESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAV 346
E+ EEF RYE F+ D +E+++ +N+ DLVP P +I+ AL A RRVND A+
Sbjct: 47 ETFEEFTARYEKEFDEA-YDLFEVQRVLNNCFSYDLVPAPAVIEKALRAARRVNDLPTAI 105
Query: 347 RFIEACKDKCGNKVNXXXXXXXXXXXXTLTELGIDTPEEL 466
R EA K K N+ ELG+ EEL
Sbjct: 106 RVFEALKYKVENE--DQYKAYLDELKDVRQELGVPLKEEL 143
>UniRef50_A1D039 Cluster: Cytochrome c oxidase subunit Va, putative;
n=5; Ascomycota|Rep: Cytochrome c oxidase subunit Va,
putative - Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / NRRL 181)(Aspergillus fischerianus (strain ATCC
1020 / DSM 3700 / NRRL 181))
Length = 158
Score = 56.8 bits (131), Expect = 4e-07
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = +2
Query: 167 ESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAV 346
E+ EEF R+E F+ D +E+++ +N+ DLVP +++ AAL A RRVND+ AV
Sbjct: 57 ETYEEFSARFEKEFDGVQ-DVFELQRNLNNCFAYDLVPSVEVLSAALRAARRVNDFPTAV 115
Query: 347 RFIEACKDK 373
R E K K
Sbjct: 116 RIFEGIKAK 124
>UniRef50_Q9UTF6 Cluster: Cytochrome c oxidase polypeptide VI,
mitochondrial precursor; n=1; Schizosaccharomyces
pombe|Rep: Cytochrome c oxidase polypeptide VI,
mitochondrial precursor - Schizosaccharomyces pombe
(Fission yeast)
Length = 140
Score = 56.4 bits (130), Expect = 6e-07
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = +2
Query: 176 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFI 355
EE + +Y +F+ D +E+++G+N+ D+VP +I+ AL A RRVND+ AVR
Sbjct: 45 EEINTKYNDFFSNVQ-DQFELQRGLNNCFAYDIVPSSDVIEQALRAARRVNDFPTAVRIF 103
Query: 356 EACKDKCGNK 385
E K K K
Sbjct: 104 EGIKVKLPTK 113
>UniRef50_A2X9I7 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 135
Score = 35.9 bits (79), Expect = 0.88
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 150 HTEVQWKVMKNSITDMKHISTEKTLMVGKSAKE*MTSVVW-ISFPTQRLSKLP--FMHA 317
H +++WK ++ KH TEK L G S E TS W + Q + KL +MHA
Sbjct: 71 HYQLRWKGKLSTSGSCKHSETEKLLYRGLSKSERYTSTFWMVCMDNQSIKKLDNNYMHA 129
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,111,284
Number of Sequences: 1657284
Number of extensions: 11214014
Number of successful extensions: 24708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 24082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24699
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -