Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_H10
         (736 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...    97   3e-19
UniRef50_UPI0000F1F31D Cluster: PREDICTED: hypothetical protein;...    36   0.78 
UniRef50_UPI000065CCB2 Cluster: Transient receptor potential cat...    35   1.8  
UniRef50_Q4RVK8 Cluster: Chromosome 15 SCAF14992, whole genome s...    35   2.4  
UniRef50_A0M2S9 Cluster: Sensor protein; n=1; Gramella forsetii ...    33   9.6  

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score = 97.5 bits (232), Expect = 3e-19
 Identities = 59/146 (40%), Positives = 59/146 (40%)
 Frame = +1

Query: 259 SRFEHNRPXXXXXXXRPSNEKATSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXMETTNVP 438
           SRFEHNRP       RPSNEKATSQS                           METTNVP
Sbjct: 37  SRFEHNRPQQGQGGQRPSNEKATSQSNQPAEKSNQQQQQQNQPKQQSSRPQQKMETTNVP 96

Query: 439 QSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPVNAPAKSEPQENTDKPKFEPXXXXX 618
           QSTN                             KPVNAPAKSEPQENTDKPKFEP     
Sbjct: 97  QSTNQQQQSQQQPQQQQQIPQQQQKQMQQQQQQKPVNAPAKSEPQENTDKPKFEPNNQNQ 156

Query: 619 XXXXXXXXXXXXXXXXXXXFGGPNKQ 696
                              FGGPNKQ
Sbjct: 157 QINQHNNLNTQQQKNINGNFGGPNKQ 182


>UniRef50_UPI0000F1F31D Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 415

 Score = 36.3 bits (80), Expect = 0.78
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -1

Query: 181 CRSYSWLAFAXYVQGLACFDIVIFTLRLMHVQRIH 77
           CR +SW +F    +G+ C D ++FTLRL+H+  IH
Sbjct: 160 CRMFSW-SF-NMGRGILCVDYMVFTLRLIHIFAIH 192


>UniRef50_UPI000065CCB2 Cluster: Transient receptor potential cation
           channel subfamily M member 4 (Long transient receptor
           potential channel 4) (hTRPM4) (Melastatin-4)
           (Calcium-activated non-selective cation channel 1).;
           n=1; Takifugu rubripes|Rep: Transient receptor potential
           cation channel subfamily M member 4 (Long transient
           receptor potential channel 4) (hTRPM4) (Melastatin-4)
           (Calcium-activated non-selective cation channel 1). -
           Takifugu rubripes
          Length = 615

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -1

Query: 229 DLLAVEAAVVHQILFDCRSYSWLAFAXYVQGLACFDIVIFTLRLMHVQRIH 77
           DL+A+   ++      CR ++W     + + + C D ++FTLRL+H+  IH
Sbjct: 282 DLIAIALFIIG---LSCRMFTWSY--EFGRNILCVDYMVFTLRLIHIFAIH 327


>UniRef50_Q4RVK8 Cluster: Chromosome 15 SCAF14992, whole genome
            shotgun sequence; n=4; Clupeocephala|Rep: Chromosome 15
            SCAF14992, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1297

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 217  VEAAVVHQILFDCRSYSWLAFAXYVQGLACFDIVIFTLRLMHVQRIH 77
            + A  +  I   CR +SW     + + + C D ++FTLRL+H+  IH
Sbjct: 941  ITAITLFIIGLTCRMFSWSY--EFGRDILCVDYMVFTLRLIHIFAIH 985


>UniRef50_A0M2S9 Cluster: Sensor protein; n=1; Gramella forsetii
           KT0803|Rep: Sensor protein - Gramella forsetii (strain
           KT0803)
          Length = 737

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
 Frame = +2

Query: 170 ITSAIKEDLV---DHRSLNGKEVVVV--ITEDFVILDLSIIDLNRD 292
           IT+++KED V   +   +NGK+ +V+  IT + +ILD+ +ID  R+
Sbjct: 78  ITNSLKEDGVFDIEETEINGKKFIVIPQITSENLILDIELIDDKRE 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,060,325
Number of Sequences: 1657284
Number of extensions: 5945515
Number of successful extensions: 15868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15860
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)