Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_H04
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11737| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0)             68   6e-12
SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_32119| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0)             40   0.003
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_55953| Best HMM Match : CUB (HMM E-Value=1.7e-19)                   29   4.7  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_11737| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0)
          Length = 702

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
 Frame = +1

Query: 442 VFSTFRLPTNDRFMASIGNGHVAANVFSDTVYMNGLYNG--NKGESHRARIPNWANIRLN 615
           VF    LPT D  MAS+GNG++A  V+S T+Y++G++NG      SHRARIP+  +I + 
Sbjct: 24  VFEASELPTTD-LMASVGNGYLATTVYSPTIYVSGVFNGRNTSSPSHRARIPSPCDISVR 82

Query: 616 STLSHIPYSPVYSLXTKEGAF 678
           S +     + +Y L   EG F
Sbjct: 83  SNIPRDSTTNLYRLNVSEGVF 103


>SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 16/83 (19%)
 Frame = +1

Query: 478 FMASIGNGHVAANVFSDTVYMNGLYNGN-------------KGESHRARIPNWANIRL-- 612
           FMASI NG+V   V S++V+++GL+NG                 +HRAR+P+ A+I    
Sbjct: 55  FMASIANGYVGTVVMSNSVHVSGLFNGKGWPKRYPIYPIYMSEHAHRARLPSTASISFKV 114

Query: 613 -NSTLSHIPYSPVYSLXTKEGAF 678
            ++ + +I  +  Y+L  K G F
Sbjct: 115 HDNDVVYINGTRSYALDVKTGVF 137


>SB_32119| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0)
          Length = 1194

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 24/107 (22%)
 Frame = +1

Query: 430 NDPKVFSTFRLPTN-----------DRFMASIGNGHVAANVFSDTVYMNGLYNGNKG--- 567
           N P  FST  LP N              M S+GNG++   ++SD+++++G+++G      
Sbjct: 11  NTPVRFSTEELPQNLSTVTVRDSKPGNLMPSVGNGYIGTVIYSDSIHISGVFSGKANPKK 70

Query: 568 ----------ESHRARIPNWANIRLNSTLSHIPYSPVYSLXTKEGAF 678
                      +HRARIP  + + +N  +  I     Y+L   +G F
Sbjct: 71  SKVYPVYFYEHTHRARIP--SQVAINYKVKGIQGKHSYALDVSQGVF 115


>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
 Frame = +1

Query: 481 MASIGNGHVAANVFSDTVYMNGLYNGNK-------------GESHRARIPNWANIRLN-S 618
           MAS+ NG++   V+SDTV++ G+Y+G                 +HRAR+P+   +  + S
Sbjct: 313 MASVANGYLGTIVYSDTVHIAGIYSGKAYPKPWPAYPLHFYEHTHRARLPSTCAVNFSLS 372

Query: 619 TLSHIPYSPVYSLXTKEGAF 678
              +I     Y+L   E  F
Sbjct: 373 ERENITGKSSYALDVSEAVF 392


>SB_55953| Best HMM Match : CUB (HMM E-Value=1.7e-19)
          Length = 105

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 600 GPVRYPST---MTLAFVTVIQSVHVDRIAEYVRCYVTIAYRR 484
           GP+ + ST   M + FVT + + H   IAEYVR   T  YRR
Sbjct: 58  GPLEFVSTGNKMYIEFVTDVTNQHKGFIAEYVRVKRT-KYRR 98


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 584 GYLTGPTSD*IRPYRTSRTVQFTLXIQKKAPLKSELI 694
           GY T P SD +RP  TS  VQ T  + + A  + + +
Sbjct: 695 GYFTLPHSDPVRPIDTSAWVQHTTAMNQFAAQQGQFV 731


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,238,178
Number of Sequences: 59808
Number of extensions: 354277
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)