Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G24
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   4.2  
06_03_0743 + 24069752-24070483,24071890-24072345                       29   4.2  
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672...    28   7.4  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    28   9.7  

>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 DGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHR 246
           DG  +S  S    S+     HD +H+ + HE+  H+
Sbjct: 740 DGPCKSMVSCKESSVAKNACHDHHHEHNHHEEPAHK 775


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 175 LSIVPRVGHDQNHDQSQHEDSHH 243
           LS+ P   HD +H   +H+  HH
Sbjct: 65  LSLTPSTTHDDDHHHRRHDQDHH 87


>06_03_0467 -
           21066354-21066501,21066831-21066893,21067223-21067291,
           21067666-21067742,21069451-21069558,21070008-21070274,
           21071964-21072607,21073370-21073550,21073688-21073834
          Length = 567

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 142 GHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRT 249
           G++ S SS    + V R GH Q   Q + E   H+T
Sbjct: 152 GNASSSSSASAAAAVARHGHQQQQQQQRSETRWHKT 187


>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 196 RRVARWTGYLCWIWTDCDHLDRSKLSTTQYERLKMNVFFI 77
           R V   +GY   +WT C+ LD  +    Q E+ K+N  F+
Sbjct: 93  RNVGLPSGY-SHLWTACNSLDTDQHQEVQQEQTKVNEEFV 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,983
Number of Sequences: 37544
Number of extensions: 351584
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)