Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G19
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       163   1e-40
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       163   1e-40
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       119   2e-27
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  163 bits (395), Expect = 1e-40
 Identities = 82/175 (46%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
 Frame = +2

Query: 2   VRYLIISXXXXXXXXXXXXEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 181
           V +LII             +G ++E+I TIIPA  LIFIA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 182 KSIGHQ*Y*RYEYSDXNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 355
           K++GHQ Y  YEYSD  +  +EFDSY++P+ ++   +FRLL+VD               T
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 356 ATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIXXGQCSEICGANHSFIPIV 520
           A DVIHS  +P+L VK+DA PGRLNQT FFI RPG+  GQCSEICGANHSF+PIV
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  163 bits (395), Expect = 1e-40
 Identities = 82/175 (46%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
 Frame = +2

Query: 2   VRYLIISXXXXXXXXXXXXEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 181
           V +LII             +G ++E+I TIIPA  LIFIA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 182 KSIGHQ*Y*RYEYSDXNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 355
           K++GHQ Y  YEYSD  +  +EFDSY++P+ ++   +FRLL+VD               T
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 356 ATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIXXGQCSEICGANHSFIPIV 520
           A DVIHS  +P+L VK+DA PGRLNQT FFI RPG+  GQCSEICGANHSF+PIV
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  119 bits (286), Expect = 2e-27
 Identities = 63/153 (41%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
 Frame = +2

Query: 2   VRYLIISXXXXXXXXXXXXEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 181
           V +LII             +G ++E+I TIIPA  LIFIA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 182 KSIGHQ*Y*RYEYSDXNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 355
           K++GHQ Y  YEYSD  +  +EFDSY++P+ ++   +FRLL+VD               T
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 356 ATDVIHS*TIPSLGVKVDANPGRLNQTNFFINR 454
           A DVIHS  +P+L VK+DA PGRLNQT FFI +
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKK 198


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 314 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*XLNIHIFS 204
           YD +H    IHY   H+  ++   IQYY   NIH ++
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,144,274
Number of Sequences: 59808
Number of extensions: 172790
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)