Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G16
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0953 + 7344095-7344444,7344978-7345049,7345136-7345208,734...    26   7.4  
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...    25   9.7  

>06_01_0953 +
           7344095-7344444,7344978-7345049,7345136-7345208,
           7345323-7345347,7345882-7345921,7346201-7346270,
           7346475-7346558
          Length = 237

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 76  VPAAVRTLKPLAIICPPC 23
           VPA V  LK + +I PPC
Sbjct: 174 VPAEVGNLKSVQVIAPPC 191


>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 112 PRLRTWL*TSWAVPAAVRT 56
           PR +T + +SW  PAA RT
Sbjct: 202 PRHKTMISSSWGAPAAFRT 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,602,592
Number of Sequences: 37544
Number of extensions: 60975
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)