Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G15
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   1.0  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.3  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   2.3  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.4  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   9.4  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 779 LPPVFDETIAMFYLQVET*SRILSH*QRFLKNSSAYEEGPRQHQKFFRYFPKFRIL 612
           LPP    T+  F   V T S +L     +   +  ++  PRQ+  +F +  +F IL
Sbjct: 709 LPPTDSRTLVEFQTIVYTNSTLLFDGSFYFSQNGGFDFEPRQNYTYFDFKSEFIIL 764


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +2

Query: 611 GVYEILENIEKTSDA------ALDLPHMLTNSLGNVVNEIIFGFKFPPEDKTWQW 757
           G+Y+++ N  K S        A+++ + +T  L  +  + I     P EDK W W
Sbjct: 56  GLYKLIVNFRKDSSPETYMSNAINIGYYVTEGLAFLGGKQIISISKPLEDKLWLW 110


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 485 GIICAEGGLWRDQRKLITSWLKSFGMSKHSVS 580
           GII +   + +D R+ ++ WL++  +  HSVS
Sbjct: 9   GIIASTPPISKDSRRNVSHWLQALAVFLHSVS 40


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/84 (22%), Positives = 33/84 (39%)
 Frame = -2

Query: 717  NIISLTTFPKEFVSI*GRSKAASEVFSIFSKISYTPEAIRFSNFSRETLCLLIPKLFNHD 538
            N +    + + +V     S+    VF +  +I  + + I   N     L  +  K+    
Sbjct: 997  NSLDFIAYIRFYVDTVVNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVK 1056

Query: 537  VINFLWSLHKPPSAQIIPFPFIRP 466
              NF WSL   P    +P+  +RP
Sbjct: 1057 SQNFGWSLTTYPKQIKLPYEILRP 1080


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +2

Query: 17   LHVTAGASESNSCS*RGDAALTSYRLLVSTTFGLLVLTIPN*YQLYLSSNMDLYFIWLVT 196
            LHV A  S   S   + D+ L  Y L VSTT    +L I       L++ M + + WL  
Sbjct: 1238 LHVAAEISVMRSLRDKLDSFLLRYPLKVSTTLKQKLLII------LLNNEMYMLYTWLTP 1291

Query: 197  FVAG 208
             + G
Sbjct: 1292 VLHG 1295


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +2

Query: 701 VNEIIFGFKFPPEDKTWQWFRQIQEEGCH 787
           +++ + GF F  E    ++++++ ++GCH
Sbjct: 101 LDKCLAGFSFANETDAQKFYKKVLDKGCH 129


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 484 WNYLCRRRFVEGPKEINNIV 543
           WNYLC      GP +++N++
Sbjct: 221 WNYLCGVLDKSGPSKLDNLI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,836
Number of Sequences: 5004
Number of extensions: 83962
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)