Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G15
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    31   0.012
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   10.0 

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 251 PGPWGLPIVGYLPFIDRY-HPHITLTNLSK---TYGAIYGLKMGSIYAVVLSDHKLVRDA 418
           PGP  LP++G    +D +  P    + + K    +  +  + +G    + L D + V   
Sbjct: 45  PGPPALPLIGNA--LDLFGSPDAMFSQVLKKAENFKDVVKIWVGPKLVICLIDPRDVEII 102

Query: 419 FSKDSFSGRAPLYLTHGLMNGNGIICAEGGLWRDQRKLI 535
            S + +  ++  Y       G+G++ + G  WR+ RKLI
Sbjct: 103 LSSNVYIDKSTEYRFFKPWLGDGLLISTGQKWRNHRKLI 141


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 794 PXHGILPPVFDETIAMFYLQ 735
           P  G   PVF + +A++YL+
Sbjct: 393 PISGSATPVFHQEMALYYLK 412


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 742 IFRWKLKAEYYLIDNVS*RIRQHMRKVQGSIRSFFD 635
           IFR     E+  + N+S  + +  + +Q  IR+  D
Sbjct: 420 IFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLD 455


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 742 IFRWKLKAEYYLIDNVS*RIRQHMRKVQGSIRSFFD 635
           IFR     E+  + N+S  + +  + +Q  IR+  D
Sbjct: 126 IFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLD 161


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 659 LDLPHMLTNSLGNVVNE 709
           + LP ML + +G +VN+
Sbjct: 245 MSLPQMLADKIGKMVNQ 261


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 664 VQGSIRSFFDIFQNFVY 614
           V GS+ +  DIF  + Y
Sbjct: 487 VAGSVEALLDIFDTYTY 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,273
Number of Sequences: 438
Number of extensions: 5953
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)