Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G11
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    29   0.92 
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    28   1.2  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    28   1.2  
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   6.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 396 FVDLRRKTKRRSKYSHSKGQQINVW 470
           F+ +RRK KR  KYSH   QQ NV+
Sbjct: 209 FISIRRKIKRFKKYSH---QQTNVF 230


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +1

Query: 355 DINNEIITAGPGTDSLIYVEKQSDGLNIHIPKVSKSMSGAYKCITNFEGQQYVQTHTIEA 534
           D+N+    AGPG+  L+    QS   +IH+P V +  +     +    G        +E 
Sbjct: 110 DVNHS--KAGPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSV----GGPETDPGNMET 163

Query: 535 YDPLYFINAAEV 570
            DPL+    AE+
Sbjct: 164 TDPLFSDELAEI 175


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = +1

Query: 235 CIACFRNDEH-KTNIIPTGSSFYQEC----HCSEPGYNMQYLKWTDINNEIITAGPGTDS 399
           C+ C  N    + N+       + EC    +     Y +  + W DINNE+I A     +
Sbjct: 195 CVLCSGNMTRVRKNLQKENERMFHECKDDTYTWPSSYRLGEVVWIDINNELIPAIIVARN 254

Query: 400 LI-YVEKQSDGLNI 438
           LI Y   Q D + +
Sbjct: 255 LINYESNQMDAVKL 268


>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 121 FISVTYIKILCFGFFTMFG 177
           F++ ++I I CFG +TM G
Sbjct: 77  FLNYSFINIYCFGPYTMVG 95


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 540 IICFYCMSLDILLPFEI 490
           +IC YC+S+   LPF I
Sbjct: 462 LICVYCLSISEKLPFSI 478


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 DEHKTNIIPTGSSFYQECHCSEPGYNMQYLKWTDINNEII 375
           D    N I T    Y++C CS      QY+K + +++E++
Sbjct: 515 DSDFENGILTYEILYKKCKCSLLSLLKQYIKDSHVHHEVL 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,258
Number of Sequences: 5004
Number of extensions: 61619
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)