Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G11
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865...    34   0.10 
11_04_0026 - 12446179-12446399,12446604-12447303                       30   1.7  
05_03_0433 - 13972772-13973206                                         30   2.2  
10_08_0964 + 21906737-21907993                                         29   3.9  
08_02_0155 - 13341324-13342080,13342142-13342203                       29   3.9  
01_01_0757 - 5840736-5842574                                           28   6.8  
08_02_0448 + 17239987-17240489,17240633-17241042,17241183-172414...    28   9.0  
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180...    28   9.0  
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842     28   9.0  

>07_01_1139 -
           10684647-10685837,10685877-10686251,10686351-10686534,
           10686699-10686895
          Length = 648

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 237 TVFRPDKHGNDH*YNNTRHRTKHCKETKTQYFNIGNRN 124
           TV   D H     Y NT H    C ET+ +  N+GN N
Sbjct: 153 TVMALDSHVTCEVYGNTGHSGNDCPETREEAMNVGNNN 190


>11_04_0026 - 12446179-12446399,12446604-12447303
          Length = 306

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 237 TVFRPDKHGNDH*YNNTRHRTKHCKETKTQYFNIGNRNKQ 118
           TV   D H     Y NT H    C ET+ +   IGN N +
Sbjct: 77  TVKALDSHITCEVYGNTGHSGNDCPETREEAMYIGNNNNR 116


>05_03_0433 - 13972772-13973206
          Length = 144

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 243 RDTVFRPDKHGNDH*YNNTRHRTKHCKETKTQYFNIGNRN 124
           +DTV   D H       NT H    C+ET+ +   +GN N
Sbjct: 29  QDTVKALDSHVTCEVCGNTGHSRNDCRETREEAMYMGNNN 68


>10_08_0964 + 21906737-21907993
          Length = 418

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 276 DVGFVLIVPEARDTVFRPDKHGNDH 202
           D    L  P  RDT+  PD HG++H
Sbjct: 154 DTNLYLFNPATRDTITLPDGHGDNH 178


>08_02_0155 - 13341324-13342080,13342142-13342203
          Length = 272

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 222 DKHGNDH*YNNTRHRTKHCKETKTQYFNIGNRN 124
           D H     Y NT H    C ET+ +   +GN N
Sbjct: 235 DTHATCEVYGNTGHSGNDCPETREEAMYMGNNN 267


>01_01_0757 - 5840736-5842574
          Length = 612

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 514 QTHTIEAYDPLYFINAAEVQHIMESQDSRINCEARGEYP 630
           QT+ +EA D  YF N     + + S +S   C    EYP
Sbjct: 546 QTYRLEATDGCYFRNVTSSGYSVASDESDEVCSDSQEYP 584


>08_02_0448 +
           17239987-17240489,17240633-17241042,17241183-17241406,
           17241590-17242018,17244726-17244809
          Length = 549

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 237 TVFRPDKHGNDH*YNNTRHRTKHCKETKTQYFNIGNRNKQP 115
           TV   D H       NT H   HC ET+ +   +GN   +P
Sbjct: 180 TVKALDSHITCKVCENTGHSGNHCPETREEAMFMGNNGYRP 220


>06_02_0101 -
           11816507-11816878,11817571-11817840,11818014-11818076,
           11818610-11819002
          Length = 365

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +1

Query: 556 NAAEVQHIMESQDSRINCEARGEYPPLITWHKGE 657
           N   V     S DS  NC  R    PLIT H GE
Sbjct: 296 NGDAVADCARSADSIANCSIRAVIKPLITDHFGE 329


>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
          Length = 355

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +1

Query: 334 MQYLKWTDINNEIITAGPGTDSLIYVEKQSD---GLNIHIPKVSKSMSGAYKCITNF 495
           +QYL+ T I+  II   P   SLI V K+ +    + + I  V ++MSG  + +++F
Sbjct: 198 VQYLQATGIDGAIIVTTPQQVSLIDVRKEINFCKKVGVPILGVVENMSGLRQVLSDF 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,879,663
Number of Sequences: 37544
Number of extensions: 357481
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)