Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_G09
(666 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75489 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 287 1e-76
UniRef50_Q6P613 Cluster: NADH dehydrogenase (Ubiquinone) Fe-S pr... 286 3e-76
UniRef50_Q4RGK6 Cluster: Chromosome undetermined SCAF15099, whol... 249 5e-65
UniRef50_Q5KF23 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa... 220 3e-56
UniRef50_Q0CI54 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa... 216 3e-55
UniRef50_A6YEC6 Cluster: NADH-ubiquinone oxidoreductase; n=1; Ch... 206 5e-52
UniRef50_P23710 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa... 203 3e-51
UniRef50_Q95748 Cluster: NADH-ubiquinone oxidoreductase 27 kDa s... 184 1e-45
UniRef50_Q2TUE7 Cluster: NADH-ubiquinone oxidoreductase; n=5; st... 183 3e-45
UniRef50_Q6V507 Cluster: Putative NADH dehydrogenase subunit 9; ... 182 5e-45
UniRef50_A4ZH78 Cluster: NADH-ubiquinone oxidoreductase; n=22; s... 180 3e-44
UniRef50_Q8W9P9 Cluster: NADH-ubiquinone oxidoreductase; n=1; Me... 176 3e-43
UniRef50_Q9G920 Cluster: NADH-ubiquinone oxidoreductase; n=1; Oc... 160 3e-38
UniRef50_Q9K1C1 Cluster: NADH-quinone oxidoreductase subunit C; ... 154 2e-36
UniRef50_Q9G4B8 Cluster: NADH-ubiquinone oxidoreductase; n=1; Th... 153 5e-36
UniRef50_Q1GTJ9 Cluster: NADH-quinone oxidoreductase; n=14; Alph... 152 6e-36
UniRef50_Q6N5M4 Cluster: NADH-quinone oxidoreductase; n=6; Alpha... 152 8e-36
UniRef50_A5CES3 Cluster: NADH-quinone oxidoreductase; n=1; Orien... 151 1e-35
UniRef50_Q37383 Cluster: NADH-ubiquinone oxidoreductase subunit ... 151 2e-35
UniRef50_Q9G894 Cluster: NADH-ubiquinone oxidoreductase; n=1; Ma... 150 3e-35
UniRef50_P29917 Cluster: NADH-quinone oxidoreductase chain 5; n=... 148 1e-34
UniRef50_Q1V2T1 Cluster: NADH-quinone oxidoreductase; n=3; Bacte... 143 4e-33
UniRef50_Q9G8U3 Cluster: NADH-ubiquinone oxidoreductase; n=1; Rh... 142 9e-33
UniRef50_Q40J53 Cluster: NADH-quinone oxidoreductase; n=14; Rick... 141 2e-32
UniRef50_A5FX10 Cluster: NADH-quinone oxidoreductase; n=1; Acidi... 138 1e-31
UniRef50_A0LDS5 Cluster: NADH-quinone oxidoreductase; n=1; Magne... 133 4e-30
UniRef50_P22237 Cluster: NADH-ubiquinone oxidoreductase subunit ... 129 7e-29
UniRef50_Q2GDX8 Cluster: NADH-quinone oxidoreductase; n=1; Neori... 128 9e-29
UniRef50_Q0EZQ7 Cluster: NADH-quinone oxidoreductase; n=1; Marip... 128 9e-29
UniRef50_Q9TAI9 Cluster: NADH-ubiquinone oxidoreductase; n=1; Ca... 128 9e-29
UniRef50_A7JF31 Cluster: NADH dehydrogenase; n=11; Francisella t... 128 1e-28
UniRef50_Q1VJE1 Cluster: NADH-quinone oxidoreductase; n=1; Psych... 128 2e-28
UniRef50_Q83BQ7 Cluster: NADH-quinone oxidoreductase; n=11; Prot... 127 2e-28
UniRef50_Q92ID7 Cluster: NADH-quinone oxidoreductase subunit C; ... 126 5e-28
UniRef50_Q9G8N3 Cluster: NADH-ubiquinone oxidoreductase; n=1; Na... 124 1e-27
UniRef50_UPI0000DAE3E5 Cluster: hypothetical protein Rgryl_01000... 124 3e-27
UniRef50_P56896 Cluster: NADH-quinone oxidoreductase subunit C 2... 124 3e-27
UniRef50_Q31HF8 Cluster: NADH-quinone oxidoreductase; n=1; Thiom... 121 2e-26
UniRef50_Q9PGJ3 Cluster: NADH-quinone oxidoreductase; n=16; Gamm... 120 3e-26
UniRef50_A4GJ20 Cluster: NADH-quinone oxidoreductase; n=1; uncul... 115 1e-24
UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1; Bd... 111 1e-23
UniRef50_Q1PWG9 Cluster: NADH-quinone oxidoreductase; n=1; Candi... 104 2e-21
UniRef50_A5UZH8 Cluster: NADH-quinone oxidoreductase; n=5; Chlor... 103 4e-21
UniRef50_A6FCN4 Cluster: NADH-quinone oxidoreductase; n=1; Morit... 103 5e-21
UniRef50_Q02CU1 Cluster: NADH-quinone oxidoreductase; n=1; Solib... 101 2e-20
UniRef50_A7H9U9 Cluster: NADH (Or F420H2) dehydrogenase, subunit... 101 2e-20
UniRef50_Q08SQ7 Cluster: NADH-quinone oxidoreductase chain 5; n=... 99 8e-20
UniRef50_A7H9V4 Cluster: NADH (Or F420H2) dehydrogenase, subunit... 99 8e-20
UniRef50_A3ERJ5 Cluster: NADH-quinone oxidoreductase; n=1; Lepto... 99 1e-19
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 97 3e-19
UniRef50_Q74GA6 Cluster: NADH-quinone oxidoreductase; n=7; Desul... 97 4e-19
UniRef50_Q1IS34 Cluster: NADH-quinone oxidoreductase; n=1; Acido... 97 4e-19
UniRef50_Q2S5J1 Cluster: NADH-quinone oxidoreductase chain c/d; ... 96 8e-19
UniRef50_Q8F7Q1 Cluster: NADH-quinone oxidoreductase; n=4; Lepto... 95 1e-18
UniRef50_A1ALP1 Cluster: NADH-quinone oxidoreductase; n=1; Pelob... 95 1e-18
UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 95 2e-18
UniRef50_Q0P851 Cluster: NADH-quinone oxidoreductase; n=15; Camp... 95 2e-18
UniRef50_Q11VB4 Cluster: NADH-quinone oxidoreductase; n=2; Sphin... 90 5e-17
UniRef50_Q2RJU5 Cluster: NADH-quinone oxidoreductase; n=1; Moore... 88 2e-16
UniRef50_A7CUG3 Cluster: NADH dehydrogenase (Ubiquinone) 30 kDa ... 87 4e-16
UniRef50_Q9RU88 Cluster: NADH-quinone oxidoreductase; n=2; Deino... 87 5e-16
UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1; ... 86 6e-16
UniRef50_Q2JFL8 Cluster: NADH-quinone oxidoreductase; n=6; Actin... 85 1e-15
UniRef50_Q7VFS4 Cluster: NADH-quinone oxidoreductase; n=1; Helic... 85 1e-15
UniRef50_A5FKI8 Cluster: NADH-quinone oxidoreductase; n=2; Flavo... 85 1e-15
UniRef50_Q67P20 Cluster: NADH-quinone oxidoreductase; n=1; Symbi... 85 2e-15
UniRef50_Q7MA49 Cluster: NADH-quinone oxidoreductase; n=4; Epsil... 84 3e-15
UniRef50_Q6MDR4 Cluster: NADH-quinone oxidoreductase; n=1; Candi... 84 3e-15
UniRef50_A1HPT3 Cluster: NADH-quinone oxidoreductase; n=1; Therm... 84 3e-15
UniRef50_Q56219 Cluster: NADH-quinone oxidoreductase subunit 5; ... 83 6e-15
UniRef50_Q1AVI5 Cluster: NADH-quinone oxidoreductase; n=1; Rubro... 83 8e-15
UniRef50_Q11XR7 Cluster: NADH-quinone oxidoreductase; n=2; Flexi... 80 4e-14
UniRef50_A5FQY5 Cluster: NADH-quinone oxidoreductase; n=3; Dehal... 79 7e-14
UniRef50_Q9KGW7 Cluster: NADH-quinone oxidoreductase; n=1; Pseud... 79 1e-13
UniRef50_A4J658 Cluster: NADH-quinone oxidoreductase; n=1; Desul... 79 1e-13
UniRef50_Q3AC79 Cluster: NADH-quinone oxidoreductase; n=1; Carbo... 79 1e-13
UniRef50_P65572 Cluster: NADH-quinone oxidoreductase subunit C; ... 78 2e-13
UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D... 78 2e-13
UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d; ... 78 2e-13
UniRef50_Q9P9G1 Cluster: F420H2 dehydrogenase subunit FpoC; n=4;... 77 3e-13
UniRef50_Q1IS60 Cluster: NADH-quinone oxidoreductase; n=2; Acido... 76 7e-13
UniRef50_Q0PIJ5 Cluster: NADH-quinone oxidoreductase; n=1; Helio... 76 7e-13
UniRef50_Q190M7 Cluster: NADH-quinone oxidoreductase; n=2; Desul... 75 1e-12
UniRef50_Q648M5 Cluster: F420H2 dehydrogenase subunit C; n=1; un... 75 2e-12
UniRef50_Q8KEC1 Cluster: NADH-quinone oxidoreductase; n=10; Chlo... 75 2e-12
UniRef50_A4AW34 Cluster: NADH-quinone oxidoreductase; n=1; Flavo... 74 4e-12
UniRef50_O25852 Cluster: NADH-quinone oxidoreductase; n=4; Helic... 73 6e-12
UniRef50_Q8R5N2 Cluster: NADH-quinone oxidoreductase; n=2; Actin... 73 8e-12
UniRef50_A6LXQ3 Cluster: NADH-quinone oxidoreductase; n=1; Clost... 73 8e-12
UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8; Bac... 70 4e-11
UniRef50_Q6KZ65 Cluster: NADH-quinone oxidoreductase chain C; n=... 69 1e-10
UniRef50_A0H050 Cluster: NADH-quinone oxidoreductase; n=2; Chlor... 66 5e-10
UniRef50_Q82DT5 Cluster: NADH-quinone oxidoreductase; n=1; Strep... 64 2e-09
UniRef50_A3ZL04 Cluster: NADH-quinone oxidoreductase; n=1; Blast... 64 2e-09
UniRef50_Q5KUJ7 Cluster: NADH-quinone oxidoreductase; n=12; Baci... 64 3e-09
UniRef50_Q6ANM6 Cluster: NADH-quinone oxidoreductase; n=1; Desul... 64 4e-09
UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n... 64 4e-09
UniRef50_Q980H4 Cluster: NADH dehydrogenase subunit C; n=4; Sulf... 64 4e-09
UniRef50_A1RZ49 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 63 7e-09
UniRef50_Q0LPS8 Cluster: NADH-quinone oxidoreductase; n=1; Herpe... 62 1e-08
UniRef50_A3DM93 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 62 1e-08
UniRef50_A1G328 Cluster: NADH-quinone oxidoreductase; n=1; Salin... 61 2e-08
UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 61 2e-08
UniRef50_A5UXK2 Cluster: NADH-quinone oxidoreductase; n=2; Rosei... 61 3e-08
UniRef50_Q2AP22 Cluster: NADH-quinone oxidoreductase; n=1; Bacil... 60 4e-08
UniRef50_Q1NLI0 Cluster: NADH-quinone oxidoreductase; n=3; delta... 60 6e-08
UniRef50_P19125 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 59 8e-08
UniRef50_Q9V0S6 Cluster: NuoC NADH dehydrogenase I, subunit C, p... 58 1e-07
UniRef50_A0RY67 Cluster: NADH-ubiquinone oxidoreductase, subunit... 58 1e-07
UniRef50_Q67KN8 Cluster: NADH-quinone oxidoreductase; n=1; Symbi... 56 6e-07
UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aqui... 56 1e-06
UniRef50_Q9X0U2 Cluster: NADH-quinone oxidoreductase; n=3; Therm... 55 1e-06
UniRef50_A2BJ95 Cluster: NAD(P)H-quinone oxidoreductase subunit ... 55 2e-06
UniRef50_A4M716 Cluster: NADH-quinone oxidoreductase; n=1; Petro... 54 2e-06
UniRef50_Q1K3R3 Cluster: NADH-quinone oxidoreductase; n=1; Desul... 53 5e-06
UniRef50_A7BSF0 Cluster: NADH dehydrogenase subunit C; n=1; Begg... 53 7e-06
UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 52 1e-05
UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 50 4e-05
UniRef50_A3THF4 Cluster: NADH-quinone oxidoreductase; n=1; Janib... 50 5e-05
UniRef50_P56754 Cluster: NAD(P)H-quinone oxidoreductase chain J,... 50 5e-05
UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1; Rh... 50 7e-05
UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein... 49 1e-04
UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 49 1e-04
UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium ce... 48 2e-04
UniRef50_Q5SD02 Cluster: NAD(P)H-quinone oxidoreductase; n=3; Ly... 48 2e-04
UniRef50_Q1PZL4 Cluster: Similar to membrane-bound [NiFe]-hydrog... 47 5e-04
UniRef50_A0LEQ0 Cluster: NADH-quinone oxidoreductase; n=1; Syntr... 47 5e-04
UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n... 46 6e-04
UniRef50_O28446 Cluster: F420H2:quinone oxidoreductase, 39.7 kDa... 46 6e-04
UniRef50_Q09F09 Cluster: NADH-ubiquinone oxidoreductase; n=7; Te... 46 0.001
UniRef50_A6DAC1 Cluster: NADH-quinone oxidoreductase; n=1; Camin... 45 0.001
UniRef50_Q9YC25 Cluster: NuoC homolog; n=1; Aeropyrum pernix|Rep... 45 0.001
UniRef50_P15600 Cluster: NADH-ubiquinone oxidoreductase subunit ... 43 0.006
UniRef50_P72319 Cluster: NADH-quinone oxidoreductase; n=3; Alpha... 42 0.010
UniRef50_Q8KPP8 Cluster: NugC; n=1; Synechococcus elongatus PCC ... 42 0.013
UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4; Methanom... 42 0.018
UniRef50_A4M374 Cluster: NADH-quinone oxidoreductase; n=1; Geoba... 41 0.023
UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precurs... 41 0.031
UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19; Bacter... 40 0.041
UniRef50_Q3AB36 Cluster: NADH-quinone oxidoreductase; n=2; Clost... 40 0.071
UniRef50_A0L9R5 Cluster: NADH-quinone oxidoreductase; n=1; Magne... 40 0.071
UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase, ... 38 0.16
UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate h... 38 0.16
UniRef50_A1VC20 Cluster: NADH-quinone oxidoreductase; n=2; Desul... 38 0.22
UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3... 37 0.38
UniRef50_Q9V0R7 Cluster: NADH dehydrogenase, 30 kD subunit; n=4;... 37 0.38
UniRef50_Q0E9R2 Cluster: NADH-ubiquinone oxidoreductase subunit;... 37 0.38
UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2; D... 36 0.66
UniRef50_A4XJP5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 35 1.5
UniRef50_A1ALK5 Cluster: NADH-quinone oxidoreductase; n=2; Pelob... 35 1.5
UniRef50_Q6A6J0 Cluster: NADH-quinone oxidoreductase; n=1; Propi... 35 2.0
UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus... 35 2.0
UniRef50_Q7M450 Cluster: Cryptogene protein G1; n=2; Trypanosoma... 35 2.0
UniRef50_A0TFH8 Cluster: Putative uncharacterized protein precur... 34 2.7
UniRef50_A3H7K7 Cluster: NADH-quinone oxidoreductase, B subunit;... 34 2.7
UniRef50_Q0MX76 Cluster: Glycosyl transferase; n=12; Bacteria|Re... 34 3.5
UniRef50_Q1DHJ8 Cluster: Putative uncharacterized protein; n=1; ... 33 4.7
UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 33 6.2
UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;... 33 8.2
>UniRef50_O75489 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 3, mitochondrial precursor; n=40;
Eukaryota|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 3, mitochondrial precursor - Homo
sapiens (Human)
Length = 264
Score = 287 bits (705), Expect = 1e-76
Identities = 129/182 (70%), Positives = 155/182 (85%)
Frame = +2
Query: 119 LRKKPPXQETRPTVAKLDPLQKAQLVDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAV 298
+R++ +TRPTV + + QL FG+YVA+ LPKYVQ+VQ++ NELEV I PD V
Sbjct: 34 VRRESAGADTRPTVRPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGV 93
Query: 299 IPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPV 478
IPVL+FL+DH +AQF +LVD+ +DVP+R NRFEI+YN+LSLR+N+RIRVKTYTDELTP+
Sbjct: 94 IPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPI 153
Query: 479 DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
+SA VFKAANWYEREIWDM+GVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYV +RYD
Sbjct: 154 ESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYD 213
Query: 659 DE 664
DE
Sbjct: 214 DE 215
>UniRef50_Q6P613 Cluster: NADH dehydrogenase (Ubiquinone) Fe-S
protein 3, 30kDa; n=11; Eumetazoa|Rep: NADH
dehydrogenase (Ubiquinone) Fe-S protein 3, 30kDa -
Xenopus tropicalis (Western clawed frog) (Silurana
tropicalis)
Length = 250
Score = 286 bits (702), Expect = 3e-76
Identities = 128/182 (70%), Positives = 153/182 (84%)
Frame = +2
Query: 119 LRKKPPXQETRPTVAKLDPLQKAQLVDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAV 298
+R + ETRPTV D +Q QL FG+YVA+ LPKYVQ+VQ+T ELEV++ PD V
Sbjct: 24 VRLEGTTTETRPTVRPQDKVQLNQLSAFGEYVAEILPKYVQQVQVTCNGELEVMVHPDGV 83
Query: 299 IPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPV 478
IPVL+FL+DH +AQF +L D+ +DVP+++NRFEI+YN+LSLR+N R+RV TYTDELTPV
Sbjct: 84 IPVLTFLRDHTNAQFKSLADLTAVDVPAKTNRFEIVYNLLSLRFNTRMRVMTYTDELTPV 143
Query: 479 DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
+SA VF+AANWYERE+WDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYV VRYD
Sbjct: 144 ESAVPVFEAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYD 203
Query: 659 DE 664
DE
Sbjct: 204 DE 205
>UniRef50_Q4RGK6 Cluster: Chromosome undetermined SCAF15099, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF15099,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 325
Score = 249 bits (609), Expect = 5e-65
Identities = 121/205 (59%), Positives = 149/205 (72%), Gaps = 25/205 (12%)
Frame = +2
Query: 110 RQNLRKKPPXQETRPTVAKLDPLQKAQLVDFGKYVADCLPKYVQKVQLTAGNELEVLIPP 289
+Q+ R + + +PTV D + QL FG+YV++ +PKYVQ+VQ+T NELEV+I P
Sbjct: 27 QQHQRLQSSAADNQPTVRPKDAVAHNQLAAFGEYVSEMMPKYVQQVQVTCYNELEVMIHP 86
Query: 290 DAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDEL 469
D VIPVL+FL+DH +AQF N++D+ +D+P+R NRFEI+YN+LSLR+N+RIRVKTYTDEL
Sbjct: 87 DGVIPVLTFLRDHTNAQFRNMIDLTAVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDEL 146
Query: 470 TPVDSACDVFKAANWYERE-------------------------IWDMYGVFFANHPDLR 574
TPVDSA V AANWYERE +WDM+GVFFANHPDLR
Sbjct: 147 TPVDSAVPVHIAANWYEREVSVGPRVRRRDGVCEDAGDRNLRVQVWDMFGVFFANHPDLR 206
Query: 575 RILTDYGFEGHPFRKDFPLSGYVXV 649
RILTDYGFEGHPFRKDFPLSGYV V
Sbjct: 207 RILTDYGFEGHPFRKDFPLSGYVEV 231
>UniRef50_Q5KF23 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa
subunit, putative; n=5; Eukaryota|Rep: NADH-ubiquinone
oxidoreductase 30.4 kDa subunit, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 284
Score = 220 bits (537), Expect = 3e-56
Identities = 104/193 (53%), Positives = 131/193 (67%), Gaps = 2/193 (1%)
Frame = +2
Query: 92 LVFSA*RQNLRKKPPXQETRPT--VAKLDPLQKAQLVDFGKYVADCLPKYVQKVQLTAGN 265
L SA RQ P +E KL P Q L +G+Y+ LPKYVQ+ + +
Sbjct: 40 LALSARRQQEPSVSPFKEPAGVNPAEKLAPAQ-TPLHQYGQYLLASLPKYVQQFSVYK-D 97
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIR 445
EL + IPP AV+PV +FL+DH Q+ +VDI +D P++ NRFE++Y++LS + +RIR
Sbjct: 98 ELTIYIPPQAVLPVFTFLRDHTQCQYRQIVDITAVDFPTKPNRFEVVYHLLSHAHQSRIR 157
Query: 446 VKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
VKTY DE+TPV S +F ANWYERE+WDMYG+FF HPDLRRILTDYGFEG P RKDF
Sbjct: 158 VKTYADEVTPVPSVVGLFNGANWYEREVWDMYGIFFEGHPDLRRILTDYGFEGFPLRKDF 217
Query: 626 PLSGYVXVRYDDE 664
PL+GY VRYDDE
Sbjct: 218 PLTGYTEVRYDDE 230
>UniRef50_Q0CI54 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa
subunit, mitochondrial; n=3; Eukaryota|Rep:
NADH-ubiquinone oxidoreductase 30.4 kDa subunit,
mitochondrial - Aspergillus terreus (strain NIH 2624)
Length = 688
Score = 216 bits (528), Expect = 3e-55
Identities = 99/183 (54%), Positives = 133/183 (72%), Gaps = 3/183 (1%)
Frame = +2
Query: 125 KKPPXQETR-PTVAKLDPLQ-KAQ-LVDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDA 295
++PP R P V D Q KA L +G+Y+ CLPK+VQ+ + +EL + +PP
Sbjct: 5 QRPPEGALRAPVVNPADKYQDKADSLHKYGQYIMACLPKHVQQFSVWK-DELVIYVPPTG 63
Query: 296 VIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTP 475
VIPV+SFLK H +A++ + DI +D P+R RFE++YN+LS+RYN+RIRVKTY DE P
Sbjct: 64 VIPVMSFLKYHTAAEYTQISDITAVDFPTRDQRFEVVYNLLSVRYNSRIRVKTYADEARP 123
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRY 655
V S +F+ A WYERE++DM+GVFF+ HPDLRRI+TDYGF+GHP RKDFPL+GY +RY
Sbjct: 124 VPSVTGLFEGALWYEREVYDMFGVFFSGHPDLRRIMTDYGFDGHPLRKDFPLTGYTELRY 183
Query: 656 DDE 664
D+E
Sbjct: 184 DEE 186
>UniRef50_A6YEC6 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Chlorokybus atmophyticus|Rep: NADH-ubiquinone
oxidoreductase - Chlorokybus atmophyticus (Soil alga)
Length = 227
Score = 206 bits (502), Expect = 5e-52
Identities = 86/155 (55%), Positives = 119/155 (76%)
Frame = +2
Query: 197 DFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDV 376
+F K + +PK++++ + NE+ + P+ ++P L FL+DH Q L+DI G+D
Sbjct: 37 NFLKSLIATVPKWIER-SMVIKNEMIIYTDPEYIVPFLFFLRDHMGTQVKILLDICGVDY 95
Query: 377 PSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFA 556
PSR +RFE++YN+L+++YN+RIR+KT DE+TPV S VF +A W+ERE+WD++G+FF+
Sbjct: 96 PSRKDRFEVVYNLLTIQYNSRIRIKTCVDEITPVSSVVSVFNSAAWWEREVWDLFGIFFS 155
Query: 557 NHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDD 661
NHPDLRRILTDYGFEGHP RKDFPLSGYV VRYDD
Sbjct: 156 NHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDD 190
>UniRef50_P23710 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa
subunit, mitochondrial precursor; n=27; Eukaryota|Rep:
NADH-ubiquinone oxidoreductase 30.4 kDa subunit,
mitochondrial precursor - Neurospora crassa
Length = 283
Score = 203 bits (496), Expect = 3e-51
Identities = 93/187 (49%), Positives = 130/187 (69%), Gaps = 2/187 (1%)
Frame = +2
Query: 110 RQNLRKKPPXQETRPTVAKLDPLQ-KAQ-LVDFGKYVADCLPKYVQKVQLTAGNELEVLI 283
RQ R+ P V D Q KA L +G ++ CLPKY+Q+ + +EL + I
Sbjct: 44 RQFPREPLPGALNAAVVNPADKYQSKADNLHKYGSWLMGCLPKYIQQFSVWK-DELTIYI 102
Query: 284 PPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTD 463
P VIPV SFLK + +A++ + DI +D P++ RFE++YN+LS+R+N+RIRVKTY D
Sbjct: 103 SPAGVIPVFSFLKYNTAAEYTQVSDITAVDFPTKDQRFEVVYNLLSVRHNSRIRVKTYAD 162
Query: 464 ELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYV 643
E++PV S ++ ANWYERE++D++GVFF HPDLRRI+TDYGF+GHP RKDFP++GY
Sbjct: 163 EVSPVPSITPLYDGANWYEREVYDLFGVFFTGHPDLRRIMTDYGFDGHPLRKDFPMTGYT 222
Query: 644 XVRYDDE 664
+RYD+E
Sbjct: 223 EIRYDEE 229
>UniRef50_Q95748 Cluster: NADH-ubiquinone oxidoreductase 27 kDa
subunit; n=58; Streptophytina|Rep: NADH-ubiquinone
oxidoreductase 27 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 190
Score = 184 bits (449), Expect = 1e-45
Identities = 87/154 (56%), Positives = 111/154 (72%), Gaps = 2/154 (1%)
Frame = +2
Query: 206 KYVADCLPK-YVQKVQLTA-GNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVP 379
KY + LPK +V+K++ + GN + D + +L FLK H + L+DI G+D P
Sbjct: 8 KYSWETLPKKWVKKMERSEHGNRFDT--NTDYLFQLLCFLKLHTYTRVQVLIDICGVDYP 65
Query: 380 SRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFAN 559
SR RFE++YN+LS RYN+RIRV+T DE+T + S +F +A W+ERE+WDM+GV F N
Sbjct: 66 SRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFIN 125
Query: 560 HPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDD 661
HPDLRRILTDYGFEGHP RKDFPLSGYV VRYDD
Sbjct: 126 HPDLRRILTDYGFEGHPLRKDFPLSGYVQVRYDD 159
>UniRef50_Q2TUE7 Cluster: NADH-ubiquinone oxidoreductase; n=5;
stramenopiles|Rep: NADH-ubiquinone oxidoreductase -
Desmarestia viridis
Length = 191
Score = 183 bits (446), Expect = 3e-45
Identities = 74/135 (54%), Positives = 103/135 (76%)
Frame = +2
Query: 260 GNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNAR 439
G+E+ + +P ++ L+FL H + F L I+G+D P R RFE++Y++L++R N R
Sbjct: 25 GHEIVISVPKKYLLATLTFLHHHSNGNFQMLTSISGVDYPDREERFEVVYDLLNVRANCR 84
Query: 440 IRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRK 619
+RVKT TDE+ P+ S +F +ANW+EREIWD++G+FF+NHPDLRRILTDYGFEGHP RK
Sbjct: 85 LRVKTCTDEINPLPSVVSLFPSANWWEREIWDLFGIFFSNHPDLRRILTDYGFEGHPLRK 144
Query: 620 DFPLSGYVXVRYDDE 664
DFPLSGY +RYD++
Sbjct: 145 DFPLSGYFELRYDED 159
>UniRef50_Q6V507 Cluster: Putative NADH dehydrogenase subunit 9;
n=1; Chlamydomonas reinhardtii|Rep: Putative NADH
dehydrogenase subunit 9 - Chlamydomonas reinhardtii
Length = 282
Score = 182 bits (444), Expect = 5e-45
Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 7/157 (4%)
Frame = +2
Query: 209 YVADCLPKYVQKVQLTAGNELEVLIP-------PDAVIPVLSFLKDHHSAQFANLVDIAG 367
Y+ +PK+V K+ +T + VL P++++P++ FL+DH + QF L+D+
Sbjct: 96 YIIKTVPKFV-KMAVTGPAQSSVLYQEPTIYTTPESLVPLMVFLRDHTNTQFKCLLDVTA 154
Query: 368 MDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGV 547
+D PSR+ RFE++Y++LS R+N RIRVK DE+T V + C VF ANW+ERE WDM+GV
Sbjct: 155 VDFPSRAARFEVVYHLLSPRWNNRIRVKVCVDEVTAVPTLCKVFNTANWFERETWDMFGV 214
Query: 548 FFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
FF+ HPDLRRILTDYGF GHP RKDFP++GY VRYD
Sbjct: 215 FFSGHPDLRRILTDYGFTGHPLRKDFPMTGYQEVRYD 251
>UniRef50_A4ZH78 Cluster: NADH-ubiquinone oxidoreductase; n=22;
stramenopiles|Rep: NADH-ubiquinone oxidoreductase -
Phytophthora sojae
Length = 188
Score = 180 bits (438), Expect = 3e-44
Identities = 78/133 (58%), Positives = 104/133 (78%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
NEL + IP + +IP+L FLK+H + QF L +I +D ++ RFEIIYN+LS+R+N+R+
Sbjct: 25 NELCINIPTNKLIPILFFLKNHTNCQFKLLSEICAVDYINKEKRFEIIYNLLSIRFNSRL 84
Query: 443 RVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
+VK +EL PVDS ++KAANW ERE+WDM+G+FF NH DLRRILTDYGFEGHP RKD
Sbjct: 85 KVKIMINELQPVDSIIHIYKAANWCEREVWDMFGIFFLNHNDLRRILTDYGFEGHPLRKD 144
Query: 623 FPLSGYVXVRYDD 661
FPLSG++ V Y++
Sbjct: 145 FPLSGFLEVFYNE 157
>UniRef50_Q8W9P9 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Mesostigma viride|Rep: NADH-ubiquinone oxidoreductase -
Mesostigma viride
Length = 190
Score = 176 bits (429), Expect = 3e-43
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Frame = +2
Query: 206 KYVADCLPKYVQKVQLTAGNELEVLIPPDAVIP-VLSFLKDHHSAQFANLVDIAGMDVPS 382
+++ +PK+++ V+ G E + + + VI FL+D A+ L+DIAG+D PS
Sbjct: 11 EHIVAMVPKWIECVEYQKG-EWSITVSNETVIDSFFHFLRDTEFAECEMLIDIAGVDYPS 69
Query: 383 RSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANH 562
R RFEI+Y +LS+ Y RIRVK DEL+PV S +++ +A ++ERE+WDMYGVFF++H
Sbjct: 70 RLKRFEIVYQLLSIHYGQRIRVKVKVDELSPVPSVTNIYPSAGYFEREVWDMYGVFFSHH 129
Query: 563 PDLRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
PDLRRILTDYGFEG+P RKDFPLSGY VRYD
Sbjct: 130 PDLRRILTDYGFEGYPLRKDFPLSGYFEVRYD 161
>UniRef50_Q9G920 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Ochromonas danica|Rep: NADH-ubiquinone oxidoreductase -
Ochromonas danica
Length = 181
Score = 160 bits (388), Expect = 3e-38
Identities = 71/132 (53%), Positives = 99/132 (75%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
+E+ +I + ++ L LK H + Q+ L I+G+D S RF I Y++LSL N+R+
Sbjct: 24 DEVCFIISHENLLHALKILKLHINYQYKLLTCISGIDFFSLKYRFCIAYDLLSLVNNSRV 83
Query: 443 RVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
RVK + +E+TP++S +++K ANW+EREIWDMYG++F NHPDLRRILTDYGFEG+P RKD
Sbjct: 84 RVKIFVNEITPIESCVEIYKNANWWEREIWDMYGIYFYNHPDLRRILTDYGFEGYPLRKD 143
Query: 623 FPLSGYVXVRYD 658
FPLSG+V +RYD
Sbjct: 144 FPLSGFVELRYD 155
>UniRef50_Q9K1C1 Cluster: NADH-quinone oxidoreductase subunit C;
n=61; Betaproteobacteria|Rep: NADH-quinone
oxidoreductase subunit C - Neisseria meningitidis
serogroup B
Length = 197
Score = 154 bits (373), Expect = 2e-36
Identities = 77/168 (45%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Frame = +2
Query: 185 AQLVDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIA 364
A + D + V+ L KV ++A E+ V P+ I V++ L+DH F LVD+
Sbjct: 2 ASIQDLYETVSRVLGNQAGKV-ISALGEITVECLPEHYISVMTALRDHEELHFELLVDLC 60
Query: 365 GMDVPSRSN------RFEIIYNILSLRYNARIRVKTYT--DELTPVDSACDVFKAANWYE 520
G+D + N RF ++ +LS++ N RIRV+ + D+ V+S D++ +A+WYE
Sbjct: 61 GVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDDFPVVESVVDIYNSADWYE 120
Query: 521 REIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
RE +DMYG+ F NHPDLRRILTDYGF GHPFRKDFP+SGYV +RYD+E
Sbjct: 121 REAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGYVEMRYDEE 168
>UniRef50_Q9G4B8 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Thraustochytrium aureum|Rep: NADH-ubiquinone
oxidoreductase - Thraustochytrium aureum
Length = 194
Score = 153 bits (370), Expect = 5e-36
Identities = 75/158 (47%), Positives = 103/158 (65%)
Frame = +2
Query: 191 LVDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGM 370
+V + K++ L K + V++ N + + I + ++ VL FL H + + L DI +
Sbjct: 1 MVFYSKWLQKMLGKSLISVKIET-NSIFLSIKKEKLLEVLVFLAKHTNCNYTILSDITVV 59
Query: 371 DVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVF 550
D P +NRFEIIYN+LSL N R+ VK T+ V S +F ANWYERE +D++G+F
Sbjct: 60 DYPKNNNRFEIIYNLLSLTNNHRLFVKIQTNSNWFVPSMVTLFSNANWYEREAFDIFGIF 119
Query: 551 FANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
F+ HPDLRRILTDYGFEGHP RKDFPL+G+ VR+D E
Sbjct: 120 FSGHPDLRRILTDYGFEGHPLRKDFPLNGFNEVRFDFE 157
>UniRef50_Q1GTJ9 Cluster: NADH-quinone oxidoreductase; n=14;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase -
Sphingopyxis alaskensis (Sphingomonas alaskensis)
Length = 274
Score = 152 bits (369), Expect = 6e-36
Identities = 69/137 (50%), Positives = 97/137 (70%)
Frame = +2
Query: 254 TAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYN 433
T G + + + +A+ V+ L+D+ + L++IAG+D P R RFE++Y++LS+ N
Sbjct: 7 TVGED-SITVRREAIAGVMISLRDN--LDYQQLMEIAGVDYPDRPERFEVVYHLLSVTKN 63
Query: 434 ARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPF 613
R+RV+ TDE TPV S V+ A W ERE++DMYGV FA +PDLRRILTDYGF+GHP
Sbjct: 64 HRLRVRVSTDEATPVPSIVPVWPVAGWLEREVFDMYGVLFAGNPDLRRILTDYGFQGHPQ 123
Query: 614 RKDFPLSGYVXVRYDDE 664
RKDFPL+GY+ +RY +E
Sbjct: 124 RKDFPLTGYIELRYSEE 140
>UniRef50_Q6N5M4 Cluster: NADH-quinone oxidoreductase; n=6;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase -
Rhodopseudomonas palustris
Length = 204
Score = 152 bits (368), Expect = 8e-36
Identities = 66/154 (42%), Positives = 99/154 (64%)
Frame = +2
Query: 203 GKYVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPS 382
G+ + LP + G +L + + ++ V+ L+D +F + +D+ +D P
Sbjct: 10 GQTIVGALPGIATGHSVGFG-QLTLTVDAGKIVEVMRLLRDDPRFRFISFIDMTAVDYPG 68
Query: 383 RSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANH 562
R+ RFEI+Y++LS + N R+RVK E T V S +VF A+W+ERE +D+YG+ H
Sbjct: 69 RAERFEIVYHLLSPKLNERVRVKAEVGETTLVPSIIEVFPGADWFEREAYDLYGIVITGH 128
Query: 563 PDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
PD+RR+LTDYGF+GHP RKDFPL+G+V VRYDD+
Sbjct: 129 PDMRRLLTDYGFDGHPLRKDFPLTGFVEVRYDDD 162
>UniRef50_A5CES3 Cluster: NADH-quinone oxidoreductase; n=1; Orientia
tsutsugamushi Boryong|Rep: NADH-quinone oxidoreductase -
Orientia tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 195
Score = 151 bits (366), Expect = 1e-35
Identities = 69/134 (51%), Positives = 91/134 (67%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
N +E +I + +I VL LK+ +F L D+ D P R+ RFEI+YN+LS+ N R+
Sbjct: 30 NHVEAIINKEQLIEVLKLLKNDKELKFTILTDVFAADFPDRNKRFEIVYNLLSIIKNIRL 89
Query: 443 RVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
VK ++ + SA VF ANWYEREI+D++G+ FANHP L+RILTDYGF GHP RKD
Sbjct: 90 IVKINLNDNELIQSATPVFSNANWYEREIYDLFGIKFANHPHLKRILTDYGFVGHPLRKD 149
Query: 623 FPLSGYVXVRYDDE 664
F LSGY V+YDD+
Sbjct: 150 FALSGYSQVKYDDK 163
>UniRef50_Q37383 Cluster: NADH-ubiquinone oxidoreductase subunit 9;
n=1; Acanthamoeba castellanii|Rep: NADH-ubiquinone
oxidoreductase subunit 9 - Acanthamoeba castellanii
(Amoeba)
Length = 195
Score = 151 bits (365), Expect = 2e-35
Identities = 66/109 (60%), Positives = 81/109 (74%)
Frame = +2
Query: 338 QFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWY 517
QF L D+ +D P + +RFE+ YN+ S++YN RI +KTYT P S +F +ANW
Sbjct: 61 QFKVLNDVCIVDYPEKIDRFELSYNLSSIKYNFRIFIKTYTSAYVP--SISTLFNSANWI 118
Query: 518 EREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
ERE WDM+GVFF NHPDLRRILTDYGFEG P RKDFPL+GY+ +RYDDE
Sbjct: 119 ERECWDMFGVFFTNHPDLRRILTDYGFEGFPLRKDFPLTGYIEIRYDDE 167
>UniRef50_Q9G894 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Malawimonas jakobiformis|Rep: NADH-ubiquinone
oxidoreductase - Malawimonas jakobiformis
Length = 187
Score = 150 bits (364), Expect = 3e-35
Identities = 69/132 (52%), Positives = 93/132 (70%)
Frame = +2
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIR 445
E+ +LI ++ +L LK + + +L+DI +D P R+NRFE+ Y++LSL+YN RI
Sbjct: 31 EIYLLISNIHLLRLLYILKKNTNILLKSLIDIICIDYPERTNRFELNYHLLSLKYNIRIN 90
Query: 446 VKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
+KTY DE++ +S ++ A W ERE+WD YGVFF N+ DLRRILTDYGFEG P RKDF
Sbjct: 91 IKTYIDEISLNNSIIKIYPNAMWSEREVWDSYGVFFKNNNDLRRILTDYGFEGFPMRKDF 150
Query: 626 PLSGYVXVRYDD 661
PLSGY + YDD
Sbjct: 151 PLSGYNEIYYDD 162
>UniRef50_P29917 Cluster: NADH-quinone oxidoreductase chain 5; n=61;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase
chain 5 - Paracoccus denitrificans
Length = 207
Score = 148 bits (358), Expect = 1e-34
Identities = 67/139 (48%), Positives = 92/139 (66%)
Frame = +2
Query: 245 VQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSL 424
+ A EL V VI ++ FL++ + +F+ L+DI +D P+R RF+++Y++LS+
Sbjct: 26 ISTQAVGELTVNATLSGVIGLIEFLRNDPNCRFSTLIDITAVDNPARPARFDVVYHLLSM 85
Query: 425 RYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEG 604
N RIRVK E V S VF ANWYERE++D++G+ F+ H DLRRILTDYGF G
Sbjct: 86 YQNQRIRVKVQVREDELVPSLIGVFPGANWYEREVFDLFGILFSGHSDLRRILTDYGFRG 145
Query: 605 HPFRKDFPLSGYVXVRYDD 661
HP RKDFP +GYV VR+ D
Sbjct: 146 HPLRKDFPTTGYVEVRWSD 164
>UniRef50_Q1V2T1 Cluster: NADH-quinone oxidoreductase; n=3;
Bacteria|Rep: NADH-quinone oxidoreductase - Candidatus
Pelagibacter ubique HTCC1002
Length = 202
Score = 143 bits (346), Expect = 4e-33
Identities = 66/158 (41%), Positives = 99/158 (62%)
Frame = +2
Query: 191 LVDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGM 370
L+D K + L ++K ++ +L + I + +I V F+K + + +F L+DI +
Sbjct: 4 LIDLEKKINSELTTKIKKTEIRH-EQLYINIDNEDLIDVTLFIKSNENTKFRQLIDITVV 62
Query: 371 DVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVF 550
D P + RF+++Y LS +N RI + E + S ++ AANW ERE++DMYGV
Sbjct: 63 DYPENAQRFKVVYLFLSHEFNQRIILSYLISENEVIPSLTPIYPAANWMEREVFDMYGVK 122
Query: 551 FANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
F +HPD+RRILTDYGFEGHP RKDFPL+G+ VRY ++
Sbjct: 123 FKDHPDMRRILTDYGFEGHPLRKDFPLTGHTEVRYSED 160
>UniRef50_Q9G8U3 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Rhodomonas salina|Rep: NADH-ubiquinone oxidoreductase -
Rhodomonas salina (Cryptomonas salina)
Length = 188
Score = 142 bits (343), Expect = 9e-33
Identities = 67/133 (50%), Positives = 89/133 (66%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
N L V I + +LSFLK++ F L+DI +D R+NRF + Y + SL+YN +
Sbjct: 29 NGLVVKIVKSKLKEILSFLKNNEFCCFKMLLDIYAIDFLQRANRFVLNYLLRSLKYNYFL 88
Query: 443 RVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
++ +E + VDS ++K NW ERE+WDM G+FF NHPDLRRILTDYGFEG P RKD
Sbjct: 89 TLQFSLNENSSVDSITYLYKNGNWVEREVWDMNGIFFDNHPDLRRILTDYGFEGFPLRKD 148
Query: 623 FPLSGYVXVRYDD 661
FP+SG+ +RYDD
Sbjct: 149 FPISGFKEIRYDD 161
>UniRef50_Q40J53 Cluster: NADH-quinone oxidoreductase; n=14;
Rickettsiales|Rep: NADH-quinone oxidoreductase -
Ehrlichia chaffeensis str. Sapulpa
Length = 192
Score = 141 bits (341), Expect = 2e-32
Identities = 63/117 (53%), Positives = 82/117 (70%)
Frame = +2
Query: 308 LSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSA 487
+SFL+ +F LVDI +D P+R RFE+IY++LS+ N R+ K E + S
Sbjct: 44 ISFLRTDTKCKFHILVDIFAIDYPTRLARFEVIYSLLSIINNIRVSCKVPLQENESIPSI 103
Query: 488 CDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
++F AA W+ERE++DMYG+ FAN+PDLRRILTDYGF GHP KDFPL+GY VRYD
Sbjct: 104 TNIFSAAGWFEREVFDMYGIIFANNPDLRRILTDYGFSGHPMLKDFPLTGYKEVRYD 160
>UniRef50_A5FX10 Cluster: NADH-quinone oxidoreductase; n=1;
Acidiphilium cryptum JF-5|Rep: NADH-quinone
oxidoreductase - Acidiphilium cryptum (strain JF-5)
Length = 213
Score = 138 bits (333), Expect = 1e-31
Identities = 61/134 (45%), Positives = 89/134 (66%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
+E + + A+ V+ L+D+ F +D+ G+D P R+ RF+++YN+LS+ N R+
Sbjct: 37 DERIIAVDRAALAAVMRTLRDNPQFAFEQCMDVCGVDWPERAERFDVVYNLLSVTRNDRL 96
Query: 443 RVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
RV TDE PV S D++ W+ERE++D++GV F D RRILTD GFEGHP RKD
Sbjct: 97 RVIVTTDETAPVPSVSDIWPGVTWWEREVFDLFGVSFDGLVDHRRILTDNGFEGHPMRKD 156
Query: 623 FPLSGYVXVRYDDE 664
FPL+G+V +RYD+E
Sbjct: 157 FPLTGHVELRYDEE 170
>UniRef50_A0LDS5 Cluster: NADH-quinone oxidoreductase; n=1;
Magnetococcus sp. MC-1|Rep: NADH-quinone oxidoreductase
- Magnetococcus sp. (strain MC-1)
Length = 187
Score = 133 bits (321), Expect = 4e-30
Identities = 63/150 (42%), Positives = 92/150 (61%)
Frame = +2
Query: 212 VADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSN 391
VA LP+ K + G L V P+ V+ L ++D F +D+ + P R
Sbjct: 13 VASILPEL--KREWVCG-ALVVWCDPEQVVDTLRTMRDDPGMNFKLFIDVTAVHYPKREK 69
Query: 392 RFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDL 571
FE++Y +LS+ N RIRVKT D TPV S ++KAA+W+ERE+++M+G+ + HPDL
Sbjct: 70 PFEVVYQLLSVHKNHRIRVKTLVDADTPVPSITGLWKAADWFEREMYEMFGILISGHPDL 129
Query: 572 RRILTDYGFEGHPFRKDFPLSGYVXVRYDD 661
RR+L DY F+G P RKDFP++G +RYD+
Sbjct: 130 RRLLLDYDFDGFPLRKDFPVTGPFELRYDE 159
>UniRef50_P22237 Cluster: NADH-ubiquinone oxidoreductase subunit 9;
n=3; Dictyosteliida|Rep: NADH-ubiquinone oxidoreductase
subunit 9 - Dictyostelium discoideum (Slime mold)
Length = 209
Score = 129 bits (311), Expect = 7e-29
Identities = 59/159 (37%), Positives = 101/159 (63%), Gaps = 4/159 (2%)
Frame = +2
Query: 194 VDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMD 373
++ G+++ +P V+K+ + LE+ + + ++ VL +LK+ Q L+DI +D
Sbjct: 12 INLGEHLRLSIPGLVKKIMYKT-HYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVD 70
Query: 374 VPS----RSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMY 541
+ + RF++IY + S+ N R+ + TY + +++ +F+++ W EREIWDM+
Sbjct: 71 CLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMF 130
Query: 542 GVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
G++F HPDLRRILTDYGF G+P +KDFP++GY+ V YD
Sbjct: 131 GIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYD 169
>UniRef50_Q2GDX8 Cluster: NADH-quinone oxidoreductase; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: NADH-quinone
oxidoreductase - Neorickettsia sennetsu (strain
Miyayama)
Length = 186
Score = 128 bits (310), Expect = 9e-29
Identities = 63/126 (50%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Frame = +2
Query: 290 DAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDEL 469
++++ ++S L S F L DI G+D R R E++Y +L L+ N R VK D
Sbjct: 25 ESLVELISHLS---SCGFEQLTDIFGIDYLEREKRIEVVYLLLDLKRNRRCCVKVSVDPA 81
Query: 470 TP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVX 646
+ V + C VF ANW+ERE++DMYGV F HPDLRRILTDY FEG P KDFPL+GY
Sbjct: 82 SEKVPTCCGVFSVANWFEREVYDMYGVVFEGHPDLRRILTDYEFEGFPMLKDFPLTGYKE 141
Query: 647 VRYDDE 664
VRYD E
Sbjct: 142 VRYDLE 147
>UniRef50_Q0EZQ7 Cluster: NADH-quinone oxidoreductase; n=1;
Mariprofundus ferrooxydans PV-1|Rep: NADH-quinone
oxidoreductase - Mariprofundus ferrooxydans PV-1
Length = 210
Score = 128 bits (310), Expect = 9e-29
Identities = 63/148 (42%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Frame = +2
Query: 239 QKVQLTAGNEL-EVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDV------PSRSNRF 397
Q + + AG + V + + + +LK HS F ++DI G+D P+ + RF
Sbjct: 37 QVLDVEAGLDCPSVTLARECIAEACHYLKGEHS--FEQVMDICGVDRSDYRGWPADAPRF 94
Query: 398 EIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRR 577
+++Y +LS+ N RIR+K +E VDS +V+ ANW+ERE +DMYG+ F +HPDLRR
Sbjct: 95 QVVYQLLSVSRNCRIRLKVGANERDLVDSVTEVWPTANWFEREAFDMYGIIFNHHPDLRR 154
Query: 578 ILTDYGFEGHPFRKDFPLSGYVXVRYDD 661
+LTDYGFEG+P RKDFP++G V + +D+
Sbjct: 155 LLTDYGFEGYPLRKDFPVTGRVEMFFDE 182
>UniRef50_Q9TAI9 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Cafeteria roenbergensis|Rep: NADH-ubiquinone
oxidoreductase - Cafeteria roenbergensis
Length = 210
Score = 128 bits (310), Expect = 9e-29
Identities = 61/139 (43%), Positives = 84/139 (60%)
Frame = +2
Query: 245 VQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSL 424
V L+ E+ V P + ++P L Q +LVD+A D RF + Y +LS
Sbjct: 42 VGLSRSAEILVYSPLEIILPASVTLASLSLFQLESLVDVACADYIQTQERFLLFYPLLSH 101
Query: 425 RYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEG 604
++ R+ + T +L + S C +F ANW ERE WDM+GV F +HPDLRRILTDYGF+G
Sbjct: 102 SFSLRVGIVTLAHDLEWLSSLCSIFPNANWAEREAWDMFGVGFLSHPDLRRILTDYGFKG 161
Query: 605 HPFRKDFPLSGYVXVRYDD 661
HP RKDFPL GY+ V +++
Sbjct: 162 HPLRKDFPLLGYLEVSFNN 180
>UniRef50_A7JF31 Cluster: NADH dehydrogenase; n=11; Francisella
tularensis|Rep: NADH dehydrogenase - Francisella
tularensis subsp. tularensis FSC033
Length = 216
Score = 128 bits (309), Expect = 1e-28
Identities = 56/93 (60%), Positives = 72/93 (77%), Gaps = 2/93 (2%)
Frame = +2
Query: 389 NRFEIIYNILSLRYNARIRVKTYTDE--LTPVDSACDVFKAANWYEREIWDMYGVFFANH 562
NRFEIIY +LS+ N RIRVK + + VDS D++ +ANW ERE++DM+G++F NH
Sbjct: 100 NRFEIIYQLLSMANNVRIRVKCKLKDAQIILVDSVSDLWPSANWAEREVYDMFGIYFNNH 159
Query: 563 PDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDD 661
PDLRR+LTDYGF GHP RKDFP +GYV +RYD+
Sbjct: 160 PDLRRVLTDYGFVGHPLRKDFPQTGYVEMRYDE 192
>UniRef50_Q1VJE1 Cluster: NADH-quinone oxidoreductase; n=1;
Psychroflexus torquis ATCC 700755|Rep: NADH-quinone
oxidoreductase - Psychroflexus torquis ATCC 700755
Length = 163
Score = 128 bits (308), Expect = 2e-28
Identities = 62/156 (39%), Positives = 102/156 (65%), Gaps = 8/156 (5%)
Frame = +2
Query: 218 DCLPKY-VQKVQL-TAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMD-VPSRS 388
+ + KY V ++Q T L +L+ + V+ ++ +K+ ++ + L+DI +D V S
Sbjct: 4 ELINKYSVGEIQFPTKSGLLSMLVKKELVLEIIQKIKEDDNSLYDQLIDITVIDNVLSNQ 63
Query: 389 N----RFEIIYNILSLRYNARIRV-KTYTDELTPVDSACDVFKAANWYEREIWDMYGVFF 553
N R+ I+Y+ LSL +N R+ V +++ +DS +F++ANW+EREI+D++G+ F
Sbjct: 64 NYSNQRYTIVYSFLSLSFNKRLLVYSNVSEDDQSIDSITQIFESANWFEREIYDLFGIAF 123
Query: 554 ANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDD 661
NHP+L+RI+ DY F+GHP RKDFPL+GY VRYD+
Sbjct: 124 KNHPNLQRIMNDYNFQGHPLRKDFPLTGYEEVRYDE 159
>UniRef50_Q83BQ7 Cluster: NADH-quinone oxidoreductase; n=11;
Proteobacteria|Rep: NADH-quinone oxidoreductase -
Coxiella burnetii
Length = 227
Score = 127 bits (306), Expect(2) = 2e-28
Identities = 55/96 (57%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Frame = +2
Query: 374 VPSRSNRFEIIYNILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVF 550
+P RF ++Y++LSLR+N RIR+KTY + P V S ++ +A+WYERE +D+YG+
Sbjct: 95 IPWNKPRFAVVYHLLSLRHNHRIRLKTYVEGDPPLVPSVIKIWSSADWYEREAFDLYGIV 154
Query: 551 FANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
F HPDLRR+LTDYGF GHPFRKDFPL G V +RYD
Sbjct: 155 FEGHPDLRRLLTDYGFVGHPFRKDFPLIGEVELRYD 190
Score = 21.4 bits (43), Expect(2) = 2e-28
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 287 PDAVIPVLSFLKDHHSAQFANLVDIAGMD 373
P ++ V + L+D F L+D+ G+D
Sbjct: 35 PTHLLEVCTALRDDPPFNFELLLDVCGVD 63
>UniRef50_Q92ID7 Cluster: NADH-quinone oxidoreductase subunit C;
n=10; Rickettsia|Rep: NADH-quinone oxidoreductase
subunit C - Rickettsia conorii
Length = 242
Score = 126 bits (304), Expect = 5e-28
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 392 RFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDL 571
RFE++YN+LSL+ N R+ +K Y E + SA ++F AA WYERE++DMYGV F + D
Sbjct: 103 RFEVVYNLLSLKLNKRLIIKVYISEKETIPSAMNIFSAACWYEREVYDMYGVNFEGNDDK 162
Query: 572 RRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
RRILTDY FEGHP RKDFPL+GY V+YD++
Sbjct: 163 RRILTDYEFEGHPLRKDFPLTGYTQVKYDEK 193
>UniRef50_Q9G8N3 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Naegleria gruberi|Rep: NADH-ubiquinone oxidoreductase -
Naegleria gruberi
Length = 186
Score = 124 bits (300), Expect = 1e-27
Identities = 54/119 (45%), Positives = 79/119 (66%)
Frame = +2
Query: 299 IPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPV 478
I + FL + QF +L+D +D RF +IY+I+S+ Y+ R+ +K + +EL +
Sbjct: 38 IMISYFLYKDMNCQFKSLIDFTCVDYSLNKKRFNLIYHIISIYYHFRVFLKFFIEELESM 97
Query: 479 DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRY 655
S C ++ +WYERE+WD +GVFF N+ +LRRIL DYGF GHP RKDFPL+G+V + Y
Sbjct: 98 YSLCYIYPNISWYEREVWDFFGVFFLNNVNLRRILLDYGFVGHPLRKDFPLTGFVELVY 156
>UniRef50_UPI0000DAE3E5 Cluster: hypothetical protein
Rgryl_01000226; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000226 - Rickettsiella
grylli
Length = 230
Score = 124 bits (298), Expect(2) = 3e-27
Identities = 53/90 (58%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Frame = +2
Query: 392 RFEIIYNILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPD 568
RF ++Y++LSL +N R+R++ + P V S ++ AANWYERE +D++GVFF HPD
Sbjct: 101 RFAVVYHLLSLTHNQRLRLRIFAQGEPPQVPSVIKLWPAANWYEREAFDLFGVFFDGHPD 160
Query: 569 LRRILTDYGFEGHPFRKDFPLSGYVXVRYD 658
LRR+LTDYGF GHPFRKDFPL+G+V VRYD
Sbjct: 161 LRRLLTDYGFVGHPFRKDFPLTGHVEVRYD 190
Score = 21.0 bits (42), Expect(2) = 3e-27
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 236 VQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMD 373
+Q++ + A NE+ + I + + V L+D +F LVD+ +D
Sbjct: 19 IQEIAV-ARNEINLEISAEKLKEVGLALRDEADFKFELLVDVCVVD 63
>UniRef50_P56896 Cluster: NADH-quinone oxidoreductase subunit C 2;
n=3; Rhizobiaceae|Rep: NADH-quinone oxidoreductase
subunit C 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 182
Score = 124 bits (298), Expect = 3e-27
Identities = 56/120 (46%), Positives = 76/120 (63%)
Frame = +2
Query: 281 IPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYT 460
+PP+ ++ FLK+H + +F L DI G+D + RFE +Y++ SL+ R+R+K
Sbjct: 34 VPPEQIVEFCRFLKEHPALEFDFLSDICGVDHYPETPRFETVYHLYSLKNKWRVRIKCRL 93
Query: 461 DELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGY 640
E V + V++ ANW+ERE WDMYG+ F HPDLRRI GFEG P RKDFPL GY
Sbjct: 94 GEPPHVPTVTGVWRTANWHEREAWDMYGIRFEGHPDLRRIYMWEGFEGFPQRKDFPLRGY 153
>UniRef50_Q31HF8 Cluster: NADH-quinone oxidoreductase; n=1;
Thiomicrospira crunogena XCL-2|Rep: NADH-quinone
oxidoreductase - Thiomicrospira crunogena (strain XCL-2)
Length = 223
Score = 121 bits (291), Expect = 2e-26
Identities = 51/93 (54%), Positives = 70/93 (75%), Gaps = 2/93 (2%)
Frame = +2
Query: 392 RFEIIYNILSLRYNARIRVKTYTDE--LTPVDSACDVFKAANWYEREIWDMYGVFFANHP 565
RF ++Y++LS+ N R+RVK Y ++ + VDS V+ A+W+ERE +D++G+ F HP
Sbjct: 102 RFAVVYHLLSVENNRRVRVKVYPEDTQMPMVDSVVSVWNCADWFEREAFDLFGILFNGHP 161
Query: 566 DLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
DLRRILTDYGF GHP RKDFPL+G+V +RYD E
Sbjct: 162 DLRRILTDYGFVGHPLRKDFPLTGHVEMRYDAE 194
>UniRef50_Q9PGJ3 Cluster: NADH-quinone oxidoreductase; n=16;
Gammaproteobacteria|Rep: NADH-quinone oxidoreductase -
Xylella fastidiosa
Length = 250
Score = 120 bits (289), Expect = 3e-26
Identities = 55/100 (55%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Frame = +2
Query: 371 DVPSRSNRFEIIYNILSLRYNARIRVKTYT--DELTPVDSACDVFKAANWYEREIWDMYG 544
DVP RF ++ +++S R+N R+RV+ + D L V S DV+ NW+ERE +D++G
Sbjct: 111 DVPQE--RFAVLAHLISYRHNRRLRVRCFASNDALPIVASLTDVWPGVNWFEREAFDLFG 168
Query: 545 VFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
+ F HPDLRRILTDYGF GHPFRKDFPL+G V VRYD+E
Sbjct: 169 IVFEGHPDLRRILTDYGFIGHPFRKDFPLTGNVEVRYDEE 208
>UniRef50_A4GJ20 Cluster: NADH-quinone oxidoreductase; n=1;
uncultured Nitrospinaceae bacterium|Rep: NADH-quinone
oxidoreductase - uncultured Nitrospinaceae bacterium
Length = 161
Score = 115 bits (276), Expect = 1e-24
Identities = 54/109 (49%), Positives = 73/109 (66%), Gaps = 2/109 (1%)
Frame = +2
Query: 314 FLKDHHSAQFANLVDIAGMDVPSRSN-RFEIIYNILSLRYNARIRVKT-YTDELTPVDSA 487
FL+D F L+DI +D S+ + RFE++Y+ SL+YN R+RVK +E +S
Sbjct: 43 FLRDDSELAFIFLMDITAVDYLSKKDERFEVVYHFYSLKYNHRLRVKIPVAEEDCVAESI 102
Query: 488 CDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLS 634
+K ANWYEREIWDMYG+ F NHP+LRRIL F+GHP RKD+P++
Sbjct: 103 TPFWKTANWYEREIWDMYGIKFRNHPNLRRILMYEEFKGHPLRKDYPIN 151
>UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I,D
subunit - Bdellovibrio bacteriovorus
Length = 560
Score = 111 bits (267), Expect = 1e-23
Identities = 47/115 (40%), Positives = 76/115 (66%)
Frame = +2
Query: 281 IPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYT 460
+P + +L FL++ S QF L+D+ G D PSR RF+++YN+ + + ++R+RVK
Sbjct: 33 VPKEDAPALLLFLRE--SGQFDFLMDVCGADYPSREKRFDVVYNLFNSKDSSRLRVKAQV 90
Query: 461 DELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
E + +A ++ A+W+ERE +DM+G+ F HP+LR+ILT + F GHP RKD+
Sbjct: 91 GEGESIGTAIPAYRGADWFEREAYDMFGIIFEGHPNLRKILTHHQFVGHPLRKDY 145
>UniRef50_Q1PWG9 Cluster: NADH-quinone oxidoreductase; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: NADH-quinone
oxidoreductase - Candidatus Kuenenia stuttgartiensis
Length = 166
Score = 104 bits (250), Expect = 2e-21
Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Frame = +2
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIR 445
EL +I + ++ V F K + + L D+ G+D + FE++Y++ S++ R+R
Sbjct: 27 ELTFVIKKEHIMQVAEFFKKNEELECDYLSDVCGVDKIETNGVFEVVYHLYSMQKKHRVR 86
Query: 446 VKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
+K P + + ++K ANW+ERE +DM+G+ F HPDLR+IL FEGHP RKD
Sbjct: 87 LKVPVPSDNPTISTVTHIWKTANWHERETYDMFGIQFQGHPDLRKILMPEDFEGHPLRKD 146
Query: 623 FPLSG 637
+P+ G
Sbjct: 147 YPIDG 151
>UniRef50_A5UZH8 Cluster: NADH-quinone oxidoreductase; n=5;
Chloroflexi (class)|Rep: NADH-quinone oxidoreductase -
Roseiflexus sp. RS-1
Length = 174
Score = 103 bits (247), Expect = 4e-21
Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Frame = +2
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIR 445
+L V + P+ ++ V FL+D +F L ++ G+D R RFE++Y+++S +RI
Sbjct: 29 DLSVYVRPERIVDVARFLRDDPELRFNFLENLCGVDYLGREPRFEVVYHLISFTNRSRIC 88
Query: 446 VKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
+K DE P V S ++ AN++ERE +DM+G+ F HP L RIL +EGHP RKD
Sbjct: 89 LKVGVDEHNPSVPSLTGLWPGANYHERETFDMFGIIFTGHPCLERILMPEDWEGHPLRKD 148
Query: 623 FPL 631
PL
Sbjct: 149 VPL 151
>UniRef50_A6FCN4 Cluster: NADH-quinone oxidoreductase; n=1;
Moritella sp. PE36|Rep: NADH-quinone oxidoreductase -
Moritella sp. PE36
Length = 180
Score = 103 bits (246), Expect = 5e-21
Identities = 45/122 (36%), Positives = 73/122 (59%)
Frame = +2
Query: 275 VLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKT 454
V++ P ++ + FL+D + +F + DI G+D + R++++Y++ S+ R+R+K
Sbjct: 32 VVVSPKDLVELCLFLRDDDAFKFNFMADIGGIDFHPNTPRYQLVYHLYSISLGWRLRIKC 91
Query: 455 YTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLS 634
+ + ++ ANW+ERE +DM+G+ F HPDLRRI FEG P RKDFPL
Sbjct: 92 PLKDPPKAPTITHLWTTANWHEREAYDMFGIVFEGHPDLRRIYMWQEFEGWPMRKDFPLR 151
Query: 635 GY 640
GY
Sbjct: 152 GY 153
>UniRef50_Q02CU1 Cluster: NADH-quinone oxidoreductase; n=1;
Solibacter usitatus Ellin6076|Rep: NADH-quinone
oxidoreductase - Solibacter usitatus (strain Ellin6076)
Length = 157
Score = 101 bits (242), Expect = 2e-20
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Frame = +2
Query: 269 LEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRV 448
LE+ +P + + FLK + +F + + +D RFEI+Y++ S+ N R+R+
Sbjct: 35 LEIAVPK--IASICGFLK--YDQKFVRVSTVTAVDRYPAEPRFEIVYHLHSIERNQRVRL 90
Query: 449 KTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
K PV +S V++ A WYERE++D++GV F NHPDLRRIL +EG+P RKD+
Sbjct: 91 KALLPGADPVIESVTGVWRGAGWYEREVFDLFGVRFLNHPDLRRILMPDDWEGYPLRKDY 150
Query: 626 PLSG 637
P++G
Sbjct: 151 PVTG 154
>UniRef50_A7H9U9 Cluster: NADH (Or F420H2) dehydrogenase, subunit C;
n=2; Anaeromyxobacter|Rep: NADH (Or F420H2)
dehydrogenase, subunit C - Anaeromyxobacter sp. Fw109-5
Length = 190
Score = 101 bits (241), Expect = 2e-20
Identities = 46/121 (38%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Frame = +2
Query: 278 LIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTY 457
++ + ++ V +FL+D + L D+ +D P ++N+ E++Y++LS R+ I +K
Sbjct: 31 VVTRERIVEVCTFLRDEPGLELDFLEDLTALDWP-KNNQIEVVYHLLSYRHRHSIVLKVQ 89
Query: 458 TDELTPVDSACD-VFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLS 634
D P S + V+K ANW+ERE++D++GV FA HPDLRRI+ + GHP RKD+ +
Sbjct: 90 LDRAAPSISTVEGVWKTANWFEREVYDLFGVTFAGHPDLRRIMLPDDWIGHPLRKDYQET 149
Query: 635 G 637
G
Sbjct: 150 G 150
>UniRef50_Q08SQ7 Cluster: NADH-quinone oxidoreductase chain 5; n=2;
Cystobacterineae|Rep: NADH-quinone oxidoreductase chain
5 - Stigmatella aurantiaca DW4/3-1
Length = 181
Score = 99.1 bits (236), Expect = 8e-20
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Frame = +2
Query: 305 VLSFLKDHHSAQFANLVDIAGMD---VPSRSNRFEIIYNILSLRYNARIRVKTYTDELTP 475
V++FLK+ F V G+D + RFE++Y + SL N +R+K E P
Sbjct: 44 VVAFLKNDPELNFKLFVSADGVDRLHLAENDPRFEVVYFLRSLTLNEHVRLKVRVTETNP 103
Query: 476 -VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
V S +FK ANW+ER +WD YG+ F HPDLRRIL F+GHP RKD+ L
Sbjct: 104 EVPSLVPLFKGANWWERFVWDFYGIRFTGHPDLRRILMYEEFQGHPLRKDYAL 156
>UniRef50_A7H9V4 Cluster: NADH (Or F420H2) dehydrogenase, subunit C;
n=2; Anaeromyxobacter|Rep: NADH (Or F420H2)
dehydrogenase, subunit C - Anaeromyxobacter sp. Fw109-5
Length = 174
Score = 99.1 bits (236), Expect = 8e-20
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Frame = +2
Query: 227 PKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEII 406
P V + G + + D ++ V FLK F I +D + RFE++
Sbjct: 14 PDAVYDPYVGVGGDDCAFVKKDRIVDVCRFLKSDPGMLFDMAPYITAVDYLGQEPRFEVV 73
Query: 407 YNILSLRYNARIRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRIL 583
YN+LSL+ N R R++ E V S +++ A+W+ER +DMYG+ F HPD+RR+L
Sbjct: 74 YNLLSLKTNRRARLRVKVPEQDAVVPSVTGLWRGADWFERYCFDMYGIRFTGHPDMRRLL 133
Query: 584 TDYGFEGHPFRKDFPLSG 637
F GHP RKD+PL G
Sbjct: 134 MYDEFVGHPLRKDYPLKG 151
>UniRef50_A3ERJ5 Cluster: NADH-quinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH-quinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 184
Score = 98.7 bits (235), Expect = 1e-19
Identities = 53/127 (41%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Frame = +2
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIR 445
+L V I P+ + V L D + +VD+ +D P RFE++Y + S+ R+
Sbjct: 25 DLSVYIRPENALDVFRALHDEPEYDYDYIVDVTSVDYPMDPERFEVVYILYSISRRHRVM 84
Query: 446 VKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRIL--TDYGFEGHPFR 616
VK E +PV DS ++K A + ERE++DM G+ F HPDLRRIL DY EG P R
Sbjct: 85 VKIRVTEDSPVVDSVVGIWKGAEFMEREVYDMMGIQFRGHPDLRRILMPDDYE-EGFPLR 143
Query: 617 KDFPLSG 637
KDFPL G
Sbjct: 144 KDFPLVG 150
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits;
n=32; Proteobacteria|Rep: NADH dehydrogenase I, B/C/D
subunits - Geobacter sulfurreducens
Length = 792
Score = 97.5 bits (232), Expect = 3e-19
Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Frame = +2
Query: 173 PLQKAQLVDFGKYVADCLPKYVQKVQLT--AGNELEVLIPPDAVIPVLSFLKDHHSAQFA 346
P K Q DFG + + +V A + L PP+ + VL LK +A F
Sbjct: 217 PAPKHQFPDFG-LAGELETAFGHRVVRDDHATDMLTYRCPPELLPDVLRHLKTRSAAPFR 275
Query: 347 NLVDIAGMDVPSRSNR-----FEIIYNILSLRYNARIRVKTYTDELTP-VDSACDVFKAA 508
L D+A +D R R F + Y++L+ +R+K TP + SA VF AA
Sbjct: 276 RLEDVACVDESCRRERSRFPDFTVNYHLLNFHIPGHLRIKAELRGDTPEIPSATSVFPAA 335
Query: 509 NWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFP 628
+WYERE +DMYG+ FA HP+LRRIL +EGHP RK+ P
Sbjct: 336 DWYEREAFDMYGIQFAGHPNLRRILMPPDWEGHPLRKNHP 375
>UniRef50_Q74GA6 Cluster: NADH-quinone oxidoreductase; n=7;
Desulfuromonadales|Rep: NADH-quinone oxidoreductase -
Geobacter sulfurreducens
Length = 162
Score = 96.7 bits (230), Expect = 4e-19
Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 2/126 (1%)
Frame = +2
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSN-RFEIIYNILSLRYNARI 442
E+ V + + V+ + FLK+ S Q+ D+ +D + RF ++YN+ S+ R+
Sbjct: 28 EVTVTVAREKVVDICRFLKE--SLQYNLCTDVTAVDYLGKQEPRFMVVYNLYSIPNKDRL 85
Query: 443 RVKT-YTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRK 619
R+K D +D+ V+ +ANW ERE++D+ GV F NHPDLRRIL + GHP RK
Sbjct: 86 RLKAGVPDADCSIDTVSCVWNSANWLEREVYDLMGVQFNNHPDLRRILMTDDWVGHPLRK 145
Query: 620 DFPLSG 637
D+PL G
Sbjct: 146 DYPLQG 151
>UniRef50_Q1IS34 Cluster: NADH-quinone oxidoreductase; n=1;
Acidobacteria bacterium Ellin345|Rep: NADH-quinone
oxidoreductase - Acidobacteria bacterium (strain
Ellin345)
Length = 165
Score = 96.7 bits (230), Expect = 4e-19
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
+EL + + ++++ + L+D QF L D+ D RFE+ Y+ LS+ R+
Sbjct: 38 DELSIWVSRESLVDAVKLLRDSSETQFTFLSDVTCTDWYPSEPRFEVSYHFLSIPRKDRV 97
Query: 443 RVKT-YTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRK 619
R+K + VDS VF + N++ERE++D++GV F HP+L RI+ ++GHP RK
Sbjct: 98 RLKVKLLGDDAQVDSLFSVFPSCNFFEREVFDLFGVRFHGHPNLARIMMPEDWKGHPLRK 157
Query: 620 DFPLSGY 640
D+P+ GY
Sbjct: 158 DYPVEGY 164
>UniRef50_Q2S5J1 Cluster: NADH-quinone oxidoreductase chain c/d;
n=2; Sphingobacteriales genera incertae sedis|Rep:
NADH-quinone oxidoreductase chain c/d - Salinibacter
ruber (strain DSM 13855)
Length = 234
Score = 95.9 bits (228), Expect = 8e-19
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
NE + + + + V FLK+ F VD+ G+D + +R+E+ YN++S R+
Sbjct: 68 NEDTIYVEKNRIREVCRFLKEEEG--FDYFVDLGGIDNFTAEDRYEVFYNLVSTERQKRL 125
Query: 443 RVKTYTDELT-PVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRK 619
R+K DE V S +V++AANW ERE +DM+G F +HPD RR+ F+ HP RK
Sbjct: 126 RLKVQVDEGDMQVPSVTEVYRAANWNEREAYDMFGFSFVDHPDPRRMYMPEDFDYHPLRK 185
Query: 620 DFPLSG 637
+FP G
Sbjct: 186 EFPQLG 191
>UniRef50_Q8F7Q1 Cluster: NADH-quinone oxidoreductase; n=4;
Leptospira|Rep: NADH-quinone oxidoreductase - Leptospira
interrogans
Length = 178
Score = 95.5 bits (227), Expect = 1e-18
Identities = 47/146 (32%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Frame = +2
Query: 209 YVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMD-VPSR 385
++ + P ++ + N + + ++ VL+ LK+ + + L D+ +D + +
Sbjct: 8 FLKEKFPHFLDSQEEVISNVPVFFLKVEGIVSVLTALKNDPTLHYNFLNDLTAVDWLGKK 67
Query: 386 SNRFEIIYNILSL-RYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANH 562
RFE+ Y + S + +++IR+K ++ V S VFK A+W ERE++D++G+ F H
Sbjct: 68 EPRFEVNYLLRSENKASSKIRIKVRLEDGESVPSITSVFKGADWPEREVYDLFGISFIGH 127
Query: 563 PDLRRILTDYGFEGHPFRKDFPLSGY 640
P+L RIL F+GHP RKDFPL G+
Sbjct: 128 PNLDRILMPDNFQGHPLRKDFPLEGF 153
>UniRef50_A1ALP1 Cluster: NADH-quinone oxidoreductase; n=1;
Pelobacter propionicus DSM 2379|Rep: NADH-quinone
oxidoreductase - Pelobacter propionicus (strain DSM
2379)
Length = 154
Score = 95.5 bits (227), Expect = 1e-18
Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Frame = +2
Query: 296 VIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTP 475
++P+++ LK S F L+DI G+D P R RF+++Y++ S R N R+R+K E P
Sbjct: 33 ILPLITRLK--RSFYFDLLLDITGVDYPERDPRFDVVYHLYSPRNNVRVRIKVPVTEAEP 90
Query: 476 -VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
V + ++ +A + ERE+ +MYG+ + DLR IL GFEGHP RKD+P+
Sbjct: 91 NVPTLTGLYGSARYIEREVHEMYGIVSIGNDDLRPILLYEGFEGHPLRKDYPI 143
>UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, B/C/D subunits -
Photobacterium sp. SKA34
Length = 565
Score = 94.7 bits (225), Expect = 2e-18
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Frame = +2
Query: 281 IPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTY- 457
+ + +I L FLK+ S++F L D++ +D R + Y +LS++ I ++T+
Sbjct: 30 VKKEHLIDTLHFLKNEASSRFEMLFDLSAIDECERGGGLSVFYYLLSVKNKQFISIRTHI 89
Query: 458 TDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFP 628
++ V + ++ ANWYERE++DM+G+ F +HPDLRRILT ++GHP RK +P
Sbjct: 90 ANDTIEVPTVVGLWPNANWYEREVYDMFGIKFTDHPDLRRILTFDFWKGHPLRKSYP 146
>UniRef50_Q0P851 Cluster: NADH-quinone oxidoreductase; n=15;
Campylobacter|Rep: NADH-quinone oxidoreductase -
Campylobacter jejuni
Length = 264
Score = 94.7 bits (225), Expect = 2e-18
Identities = 41/105 (39%), Positives = 62/105 (59%)
Frame = +2
Query: 341 FANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYE 520
+ + + + +D + N FE+ Y +L+L R+R+KT+ + S VFK ANW E
Sbjct: 81 YLSFTEASAIDFIADKNGFEVFYQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSE 140
Query: 521 REIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRY 655
REI+DM+G+F NHP+L+RIL + GHP K +PL G R+
Sbjct: 141 REIYDMFGIFIINHPNLKRILMPDDWFGHPLLKTYPLKGDEFARW 185
>UniRef50_Q11VB4 Cluster: NADH-quinone oxidoreductase; n=2;
Sphingobacteriales|Rep: NADH-quinone oxidoreductase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 175
Score = 89.8 bits (213), Expect = 5e-17
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Frame = +2
Query: 305 VLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTP-VD 481
VL+FL S F L D+ G+ P + ++Y++ +L N RIRVK + + P +D
Sbjct: 51 VLNFLYSEASLGFTFLTDLTGVHYPQGEDLLGVVYHLHNLPENIRIRVKAFFPKADPYID 110
Query: 482 SACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
SA +F+AANW ERE +D +G+ F HP+L RIL HP RK++ L
Sbjct: 111 SATTLFQAANWMERETYDFFGIIFTGHPNLIRILNVDDLGYHPMRKEYAL 160
>UniRef50_Q2RJU5 Cluster: NADH-quinone oxidoreductase; n=1; Moorella
thermoacetica ATCC 39073|Rep: NADH-quinone
oxidoreductase - Moorella thermoacetica (strain ATCC
39073)
Length = 148
Score = 87.8 bits (208), Expect = 2e-16
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Frame = +2
Query: 275 VLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKT 454
+++P D ++ +++ LK+ F L D+ +D P R E++Y++LS+ A IRVK
Sbjct: 26 LVVPADQLLALMTELKEKRGFNF--LADLTAVDYPE-DERIEMVYHLLSVPGMAEIRVKV 82
Query: 455 YTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
D P V S ++ AAN ERE +D+ GV F HPDL+RIL F GHP RKDF L
Sbjct: 83 NLDRQHPEVPSLTALWPAANVQEREAFDLMGVKFPGHPDLKRILCPDDFVGHPLRKDFRL 142
>UniRef50_A7CUG3 Cluster: NADH dehydrogenase (Ubiquinone) 30 kDa
subunit; n=1; Opitutaceae bacterium TAV2|Rep: NADH
dehydrogenase (Ubiquinone) 30 kDa subunit - Opitutaceae
bacterium TAV2
Length = 207
Score = 87.0 bits (206), Expect = 4e-16
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Frame = +2
Query: 281 IPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSN-RFEIIYNILSLRYNARIRVKT- 454
+P + L L+D + L+D+ G+D + + RF ++++LS IRV
Sbjct: 29 VPITEAVGTLKTLRDEFACDL--LIDVTGIDNGTDATPRFTTVWHVLSTTKATYIRVAAD 86
Query: 455 YTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
+ PV + ++ AANW+ERE +D+ G+ F+ HPDLRRIL G+ GHP RKDFPL
Sbjct: 87 CASDTEPVAPTVSQLWAAANWHERETYDLLGITFSEHPDLRRILMWEGYPGHPLRKDFPL 146
Query: 632 SG 637
+G
Sbjct: 147 AG 148
>UniRef50_Q9RU88 Cluster: NADH-quinone oxidoreductase; n=2;
Deinococcus|Rep: NADH-quinone oxidoreductase -
Deinococcus radiodurans
Length = 224
Score = 86.6 bits (205), Expect = 5e-16
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Frame = +2
Query: 350 LVDIAGMD----VPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWY 517
L+D+ G+D R F ++Y++ R + R+ ++ + E VDS ++KAAN+
Sbjct: 70 LLDVIGVDYSRYTAPRPQPFAVLYSVAHPRDHRRLFLRVWLSEGEAVDSLFPIWKAANYL 129
Query: 518 EREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
ERE++D+ G+ F HPDLR++LT EGHP RKDFPL
Sbjct: 130 EREVYDLLGIEFTGHPDLRKVLTPDDLEGHPLRKDFPL 167
>UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 152
Score = 86.2 bits (204), Expect = 6e-16
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = +2
Query: 491 DVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYV 643
+ + A W+ERE +D+YG+ F HPDLRRILTDYGF GHPFRKDFPLSG V
Sbjct: 2 ECWPAVGWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKDFPLSGTV 52
>UniRef50_Q2JFL8 Cluster: NADH-quinone oxidoreductase; n=6;
Actinomycetales|Rep: NADH-quinone oxidoreductase -
Frankia sp. (strain CcI3)
Length = 236
Score = 85.4 bits (202), Expect = 1e-15
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Frame = +2
Query: 236 VQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPS--RSNRFEIIY 409
V++V + G EL V + ++++ V L+D +F L ++G+D P R +
Sbjct: 81 VERVVVDRG-ELTVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVDYPDDVTGRRLHSVA 139
Query: 410 NILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILT 586
++ S+ + R+RV+ + P V S V+ A+W+ERE +DM+G+ + HP L RI+
Sbjct: 140 HLTSMTHRRRVRVEVSVTDADPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMM 199
Query: 587 DYGFEGHPFRKDFPLSG 637
+ GHP RKD+PL G
Sbjct: 200 PDDWIGHPQRKDYPLGG 216
>UniRef50_Q7VFS4 Cluster: NADH-quinone oxidoreductase; n=1;
Helicobacter hepaticus|Rep: NADH-quinone oxidoreductase
- Helicobacter hepaticus
Length = 247
Score = 85.0 bits (201), Expect = 1e-15
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Frame = +2
Query: 305 VLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNA--RIRVKTYTDELTPV 478
+ + +K+ HS + L +++ +D N FE+ Y +L L + R+++KT + +
Sbjct: 65 IFALIKELHSLGYEILTEMSAIDKLEECNEFELFYLLLKLEDTSSKRLKIKTKIKKGQQI 124
Query: 479 DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSG 637
S +FK+ANW ERE +DM+G+ F HP L+R++ + GHP K +PL G
Sbjct: 125 SSLTPLFKSANWSERECYDMFGIIFNGHPYLQRLIMPKDWVGHPLLKSYPLQG 177
>UniRef50_A5FKI8 Cluster: NADH-quinone oxidoreductase; n=2;
Flavobacterium|Rep: NADH-quinone oxidoreductase -
Flavobacterium johnsoniae UW101
Length = 173
Score = 85.0 bits (201), Expect = 1e-15
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Frame = +2
Query: 290 DAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSN--RFEIIYNILSLRYNARIRVKTYTD 463
D + ++ FLK+ QF L D+ G+ P + +F ++Y++ + N RIR+K Y +
Sbjct: 37 DKITALILFLKNDSELQFHFLTDLCGIHYPDNESERQFAVVYHLHNWFENKRIRIKVYLN 96
Query: 464 ELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGY 640
P + + ++F ++NW ERE +D YG+ F HP L+RIL P RK+FP+
Sbjct: 97 GEKPEIKTISNIFLSSNWMERETYDFYGINFVGHPQLKRILNMDEMVSFPMRKEFPMEDS 156
Query: 641 VXVRYDD 661
DD
Sbjct: 157 GRTDKDD 163
>UniRef50_Q67P20 Cluster: NADH-quinone oxidoreductase; n=1;
Symbiobacterium thermophilum|Rep: NADH-quinone
oxidoreductase - Symbiobacterium thermophilum
Length = 200
Score = 84.6 bits (200), Expect = 2e-15
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Frame = +2
Query: 218 DCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDV-PSRSNR 394
+ P V+++ T +V + D PV +LK+ F LVDI D P R R
Sbjct: 26 EAFPGKVEQIPPTNDLIPQVYVASDVHEPVARWLKERG---FHMLVDITAADYWPKREPR 82
Query: 395 FEIIYNILSLRYN--------ARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVF 550
FE++Y++ + IRV+ E PV S +++ AN EREIWD +G+
Sbjct: 83 FELVYHLREMPEKDPKGDKGLGMIRVRVKLTEKEPVQSLSHIWEMANPAEREIWDQFGLN 142
Query: 551 FANHPDLRRILTDYGFEGHPFRKDFPLSG 637
HP+L RIL +EGHP R+D+PL G
Sbjct: 143 IVGHPNLTRILNPDDWEGHPLRRDYPLRG 171
>UniRef50_Q7MA49 Cluster: NADH-quinone oxidoreductase; n=4;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase -
Wolinella succinogenes
Length = 266
Score = 83.8 bits (198), Expect = 3e-15
Identities = 36/96 (37%), Positives = 63/96 (65%)
Frame = +2
Query: 350 LVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREI 529
L +++ +D + FE+ Y +LS+ + R+R+K + E ++SA D+F++A+W ERE+
Sbjct: 84 LSEMSAIDYLETRHGFEVFYQLLSMEKHHRMRLKLFLPEGMELESANDLFRSADWSEREM 143
Query: 530 WDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSG 637
+DM+G+ +HP L+RIL + G+P RK +PL G
Sbjct: 144 YDMFGIRLLHHPYLKRILMPDDWSGYPLRKSYPLHG 179
>UniRef50_Q6MDR4 Cluster: NADH-quinone oxidoreductase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
NADH-quinone oxidoreductase - Protochlamydia amoebophila
(strain UWE25)
Length = 174
Score = 83.8 bits (198), Expect = 3e-15
Identities = 40/110 (36%), Positives = 64/110 (58%)
Frame = +2
Query: 305 VLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDS 484
+L+FLK H QF L+D+ +D R +I+Y + + RIR+ + + +
Sbjct: 40 ILNFLKIHEDCQFEVLMDLTAVDYLFPVKRTQILYFLQNFSRLDRIRIGITIERGEMLPT 99
Query: 485 ACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLS 634
D+++ ANWYERE++DM+GV F HP+L RIL + GHP +D+ L+
Sbjct: 100 VTDLWEGANWYERELFDMFGVEFKGHPELSRILMPDHWLGHPMLRDYALT 149
>UniRef50_A1HPT3 Cluster: NADH-quinone oxidoreductase; n=1;
Thermosinus carboxydivorans Nor1|Rep: NADH-quinone
oxidoreductase - Thermosinus carboxydivorans Nor1
Length = 155
Score = 83.8 bits (198), Expect = 3e-15
Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = +2
Query: 257 AGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNA 436
AG E +L+ + +L LK+ F L + ++ P+ FE++Y++ SL
Sbjct: 26 AGVEPVLLVTAGRLKAILKRLKEDERCCFDFLSSLTAVEYPAY---FEVVYHLYSLPLGH 82
Query: 437 RIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPF 613
R VKT + P V S D++ AN+ ERE++D+ GV F HP L RIL GF+GHP
Sbjct: 83 RATVKTRVAKDDPQVPSIADLWPTANFQEREVYDLLGVVFTGHPGLTRILLPEGFDGHPL 142
Query: 614 RKDFPL 631
RKD+ L
Sbjct: 143 RKDYKL 148
>UniRef50_Q56219 Cluster: NADH-quinone oxidoreductase subunit 5;
n=3; Bacteria|Rep: NADH-quinone oxidoreductase subunit 5
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 207
Score = 83.0 bits (196), Expect = 6e-15
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 11/113 (9%)
Frame = +2
Query: 326 HHSAQFAN-LVDIAGMDVPS----RSNRFEIIYNILSLRY-----NARIRVKTYTDELTP 475
H+ A N L DI G+D + R RF ++Y ++SL +R V+ Y E P
Sbjct: 40 HYKAMGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDP 99
Query: 476 -VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
+ + D++ +AN+ ERE++D++G+ F HPDLR+ILT EGHP RKD+PL
Sbjct: 100 RLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPL 152
>UniRef50_Q1AVI5 Cluster: NADH-quinone oxidoreductase; n=1;
Rubrobacter xylanophilus DSM 9941|Rep: NADH-quinone
oxidoreductase - Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129)
Length = 163
Score = 82.6 bits (195), Expect = 8e-15
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = +2
Query: 260 GNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNAR 439
GN + + + P +V VLS + Q ++ ++ + V R FE+ Y +L +R AR
Sbjct: 34 GNTVVLGVDPGSVPAVLSTAR-----QSLGILHLSFITVVDRQGSFELTYELLDMR-GAR 87
Query: 440 IRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRI-LTDYGFEGHPF 613
+RVKT PV D+ ++ ANW+ERE +DM+GV F HPDLRR+ + F+ HP
Sbjct: 88 VRVKTVLQGEEPVIDTVTGIYPTANWHEREAYDMFGVAFRGHPDLRRVYMWQDHFDHHPL 147
Query: 614 RKDFPLS 634
K F +S
Sbjct: 148 LKSFEIS 154
>UniRef50_Q11XR7 Cluster: NADH-quinone oxidoreductase; n=2;
Flexibacteraceae|Rep: NADH-quinone oxidoreductase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 168
Score = 80.2 bits (189), Expect = 4e-14
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Frame = +2
Query: 272 EVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVK 451
++L+ + + FL+D F L + G+D N E+IY++ S+ ++ + +K
Sbjct: 32 QLLVQKAFLKDICFFLRDDERFFFDQLSCLTGLDNGPVKNTVEVIYHLYSIPFHLFLVIK 91
Query: 452 TYT------DELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPF 613
D L + S V++ A+W+ERE +D+YG+ F+ HPDLRRIL +EG+P
Sbjct: 92 VEAERGDGKDILPEIPSVEQVWRTADWHEREAFDLYGIRFSGHPDLRRILLPADWEGYPL 151
Query: 614 RKDFPLSGY 640
RKD+ Y
Sbjct: 152 RKDYTEQEY 160
>UniRef50_A5FQY5 Cluster: NADH-quinone oxidoreductase; n=3;
Dehalococcoides|Rep: NADH-quinone oxidoreductase -
Dehalococcoides sp. BAV1
Length = 149
Score = 79.4 bits (187), Expect = 7e-14
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +2
Query: 224 LPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEI 403
L K + +++ A +L+ P+ + V L S Q L ++ D S EI
Sbjct: 14 LSKELPGIEIQADGSF-LLVSPEDMHKVCERLTSLPSIQMDYLTNLTAADY---SEYIEI 69
Query: 404 IYNILSLRYNARIRVKT-YTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRR 577
I+++ S+ +N VKT TD+ P + S D+++ A EREI+D++GVFF NH L+R
Sbjct: 70 IFHLNSITHNTSATVKTRLTDKKNPKMASVVDIWRGAELQEREIYDLFGVFFENHIGLKR 129
Query: 578 ILTDYGFEGHPFRKDF 625
I GFEG+P RKDF
Sbjct: 130 IFLWEGFEGYPLRKDF 145
>UniRef50_Q9KGW7 Cluster: NADH-quinone oxidoreductase; n=1;
Pseudomonas fluorescens|Rep: NADH-quinone oxidoreductase
- Pseudomonas fluorescens
Length = 200
Score = 79.0 bits (186), Expect = 1e-13
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Frame = +2
Query: 296 VIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNR--------FEIIYNILSLRYNARIRVK 451
++ VL+FL++ + L D+ G+D R+ R F + Y+++S+ N+ + +K
Sbjct: 51 LVEVLTFLRNLPKP-YVMLYDLHGVDERLRTKRQGLPDGVDFTVFYHLMSIERNSDVMIK 109
Query: 452 TYTDELT-PVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
E V + ++ ANWYERE+WDM+G+ F HP L RI+ +EGHP RKD
Sbjct: 110 VALSESDLSVPTVTGIWPNANWYEREVWDMFGIDFPGHPHLTRIMMPPTWEGHPLRKD 167
>UniRef50_A4J658 Cluster: NADH-quinone oxidoreductase; n=1;
Desulfotomaculum reducens MI-1|Rep: NADH-quinone
oxidoreductase - Desulfotomaculum reducens MI-1
Length = 147
Score = 79.0 bits (186), Expect = 1e-13
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +2
Query: 203 GKYVADCLPKYVQKV-QLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVP 379
GK +A+ + + K L + + +P ++++ + LK+ + F L ++ G D
Sbjct: 3 GKPLAEIIQELTNKYPSLEVSEKGHLTVPVESLMLFMRDLKEIYG--FNYLTNVTGADY- 59
Query: 380 SRSNRFEIIYNILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFA 556
E++YN+ + + + VKT D P V S ++ A W ERE++D+ G+ F
Sbjct: 60 --LEYLEVVYNLCIIGHPEMLHVKTRLDRNNPEVPSMVPIWGGAIWQEREVFDLLGIVFT 117
Query: 557 NHPDLRRILTDYGFEGHPFRKDFPLSG 637
+HPDLRRIL +EGHP R+D+ G
Sbjct: 118 DHPDLRRILLADDWEGHPLRRDYQWEG 144
>UniRef50_Q3AC79 Cluster: NADH-quinone oxidoreductase; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep:
NADH-quinone oxidoreductase - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 143
Score = 78.6 bits (185), Expect = 1e-13
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = +2
Query: 305 VLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI-RVKTYTDELTP-V 478
+L+ L++ F L ++ +D P RFEI+Y++ S N I VKT + P +
Sbjct: 31 ILNVLREIKDMGFELLTNLTAVDYPPE--RFEIVYHVESFLNNYDIITVKTSVNRENPRI 88
Query: 479 DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
SA ++ AA+W ERE++D+ G+ F NHP L R+ FEG P RKD+
Sbjct: 89 PSAFSIWPAADWQEREVYDLMGIVFENHPHLTRVFLGEDFEGFPLRKDY 137
>UniRef50_P65572 Cluster: NADH-quinone oxidoreductase subunit C;
n=27; Actinomycetales|Rep: NADH-quinone oxidoreductase
subunit C - Mycobacterium bovis
Length = 236
Score = 78.2 bits (184), Expect = 2e-13
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Frame = +2
Query: 236 VQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNR-FEIIYN 412
V+KV + +EL + + D + V L+D +F + ++G+ P + R +Y
Sbjct: 82 VEKV-VVYRDELTLHVRRDLLPRVAQRLRDEPELRFELCLGVSGVHYPHETGRELHAVYP 140
Query: 413 ILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTD 589
+ S+ +N R+R++ + P + S ++ +W+ERE +D +G+ F HP L RI
Sbjct: 141 LQSITHNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYDFFGIIFDGHPALTRIEMP 200
Query: 590 YGFEGHPFRKDFPLSGYVXVRY 655
++GHP RKD+PL G + V Y
Sbjct: 201 DDWQGHPQRKDYPLGG-IPVEY 221
>UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D;
n=95; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit C/D - Salmonella typhimurium
Length = 600
Score = 78.2 bits (184), Expect = 2e-13
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 245 VQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNR-------FEI 403
VQ T V + + ++ V FLK + L D+ GMD R++R F +
Sbjct: 40 VQATRTGIPVVWVKREQLLEVGDFLKKLPKP-YVMLFDLHGMDERLRTHRDGLPAADFSV 98
Query: 404 IYNILSLRYNARIRVKTYTDELT-PVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRI 580
Y+++S+ N I +K E V + +F ANWYERE W+M+G+ HP L RI
Sbjct: 99 FYHLISIERNRDIMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRI 158
Query: 581 LTDYGFEGHPFRKDFP 628
+ +EGHP RKD+P
Sbjct: 159 MMPQTWEGHPLRKDYP 174
>UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
NADH-quinone oxidoreductase chain c/d - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 561
Score = 77.8 bits (183), Expect = 2e-13
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Frame = +2
Query: 254 TAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMD--VPSRSNRFEIIYNILSLR 427
T L V I P+ + + F++D+ F L DI +D + RF + Y +
Sbjct: 16 TTNGLLSVQINPNDIYEAVLFVRDNIG--FEILADIVCVDNLYIDKEKRFSLYYIFRKIS 73
Query: 428 YNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGH 607
+ + + D V S ++K+ANW ERE +D +GV F NHP+L+RIL F+G+
Sbjct: 74 -SENLCIYIDIDINQSVKSVESIYKSANWGERECFDQFGVKFENHPNLKRILNHKDFQGY 132
Query: 608 PFRKDFPLSGYVXVRYDDE 664
P RKD+P++ Y + D+
Sbjct: 133 PLRKDYPITKYQVLYESDD 151
>UniRef50_Q9P9G1 Cluster: F420H2 dehydrogenase subunit FpoC; n=4;
Methanosarcinaceae|Rep: F420H2 dehydrogenase subunit
FpoC - Methanosarcina mazei (Methanosarcina frisia)
Length = 158
Score = 77.4 bits (182), Expect = 3e-13
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Frame = +2
Query: 227 PKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEII 406
P+ + + + + + + D V +LK S QF +L ++G+D P R + E +
Sbjct: 15 PEAISEAGIESPIRIRAYVDKDKAKEVCEYLKG--SLQFDHLCSVSGVDYPQR-DELEAV 71
Query: 407 YNILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLR-RI 580
Y+I S + + +K +P ++S V+ ANWYERE +++YG+FF NHP+L+ +
Sbjct: 72 YHIASYDHPVVLMLKARLPRDSPEIESVVSVYWNANWYERETYELYGIFFKNHPELKPLV 131
Query: 581 LTDYGFEGHPFRKDF 625
L D P RKD+
Sbjct: 132 LPDDMLGEWPLRKDY 146
>UniRef50_Q1IS60 Cluster: NADH-quinone oxidoreductase; n=2;
Acidobacteria|Rep: NADH-quinone oxidoreductase -
Acidobacteria bacterium (strain Ellin345)
Length = 227
Score = 76.2 bits (179), Expect = 7e-13
Identities = 34/95 (35%), Positives = 54/95 (56%)
Frame = +2
Query: 341 FANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYE 520
F VD+ + P R +F+++Y + S N R+RV+ + V S ++ A+W E
Sbjct: 113 FDYCVDVTALHWPKREEQFDMVYILYSFAKNERVRVEVPIKDGDKVRSVYSLWPTADWLE 172
Query: 521 REIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
RE++DM+G+ F HP L+RIL + G P RKD+
Sbjct: 173 REVFDMFGIEFTEHPGLKRILLPDEWTGFPLRKDY 207
>UniRef50_Q0PIJ5 Cluster: NADH-quinone oxidoreductase; n=1;
Heliobacillus mobilis|Rep: NADH-quinone oxidoreductase -
Heliobacillus mobilis
Length = 154
Score = 76.2 bits (179), Expect = 7e-13
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +2
Query: 275 VLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKT 454
+++ + +IPV+ L F L DI+ +D + E++Y + S+++ +RVK+
Sbjct: 33 LVVTKENLIPVMEKLCKSPEWAFDMLSDISSVD--RKEAGLEVVYQLFSIKHKYDLRVKS 90
Query: 455 YTD-ELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
+ V + ++ AN+ ERE++D+ GV F HP++ R+L FEGHP RKDF L
Sbjct: 91 IIPRDEAQVPTVTSIWPGANFMEREVYDLMGVAFPGHPNMTRLLLPEEFEGHPLRKDFKL 150
>UniRef50_Q190M7 Cluster: NADH-quinone oxidoreductase; n=2;
Desulfitobacterium hafniense|Rep: NADH-quinone
oxidoreductase - Desulfitobacterium hafniense (strain
DCB-2)
Length = 163
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Frame = +2
Query: 350 LVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPV-DSACDVFKAANWYERE 526
L DI G+D + + F+++Y + SLR ++RVK D PV DS ++ A++ ERE
Sbjct: 56 LHDIGGVD---KLDHFQVVYQLTSLRGPQKLRVKAIVDRDNPVIDSVTRIWAGADFMERE 112
Query: 527 IWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
+DM+G+ F HP+L+RI FEG P RKD+
Sbjct: 113 AYDMFGIQFKGHPNLKRIYMWDDFEGFPLRKDY 145
>UniRef50_Q648M5 Cluster: F420H2 dehydrogenase subunit C; n=1;
uncultured archaeon GZfos37B2|Rep: F420H2 dehydrogenase
subunit C - uncultured archaeon GZfos37B2
Length = 188
Score = 74.9 bits (176), Expect = 2e-12
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Frame = +2
Query: 296 VIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYT--DEL 469
++ + S+LKD+ QF L I +D P +FE+ Y I S ++ +++K DE
Sbjct: 40 IVDICSYLKDN--LQFNRLSGITSLDFPEYG-KFEVAYMIASYDHSVIVKLKAAVPRDES 96
Query: 470 TPVDSACDVFKAANWYEREIWDMYGVFFANHPDLR-RILTDYGFEGHPFRKDFP 628
+D+ V+ ANWYERE+++ G++F HP+L +L+D +P RKD+P
Sbjct: 97 PSIDTVIPVWWNANWYEREVYEFMGIYFDGHPELTPLVLSDDMVGEYPLRKDYP 150
>UniRef50_Q8KEC1 Cluster: NADH-quinone oxidoreductase; n=10;
Chlorobiaceae|Rep: NADH-quinone oxidoreductase -
Chlorobium tepidum
Length = 173
Score = 74.5 bits (175), Expect = 2e-12
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +2
Query: 299 IPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSL-RYNARIRVKTYTD-ELT 472
+ + +++D+ QF L ++G+D P + I+ N+ + +Y +I VK +
Sbjct: 51 VDIALYMRDNSLLQFNYLACLSGVDYPEEQ-KLGIVCNLECIGKYTHKIAVKVKCPRDGG 109
Query: 473 PVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
+ S V+ ANW+ERE +DMYG+ F HPDLRRIL + G P RKD+
Sbjct: 110 SIPSVSCVWHTANWHEREAYDMYGMVFEGHPDLRRILCPEDWTGFPLRKDY 160
>UniRef50_A4AW34 Cluster: NADH-quinone oxidoreductase; n=1;
Flavobacteriales bacterium HTCC2170|Rep: NADH-quinone
oxidoreductase - Flavobacteriales bacterium HTCC2170
Length = 197
Score = 73.7 bits (173), Expect = 4e-12
Identities = 37/121 (30%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Frame = +2
Query: 269 LEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSL--RYNARI 442
L + + P+ +++ LK + F L ++G+D ++Y++ S R++ I
Sbjct: 71 LNITVQPEQFYYLMTQLKIDQNTHFDYLFCLSGVDW---GTDLGVVYHLESTTHRHSIVI 127
Query: 443 RVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
+VKT E +DS CD++ A ++ERE++D +G+ F NHP+L+R+ ++G P RKD
Sbjct: 128 KVKTSDRENPTLDSVCDIWMTAEFHEREVYDFFGIKFNNHPNLKRLFLTDEWDGFPLRKD 187
Query: 623 F 625
+
Sbjct: 188 Y 188
>UniRef50_O25852 Cluster: NADH-quinone oxidoreductase; n=4;
Helicobacter|Rep: NADH-quinone oxidoreductase -
Helicobacter pylori (Campylobacter pylori)
Length = 266
Score = 72.9 bits (171), Expect = 6e-12
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
Frame = +2
Query: 122 RKKPPXQETRPTVAK-LDPLQKAQLVDFGKYVADCLPKYVQKVQLTAGNELEVLIPPDAV 298
R+ P + PT K L+ + + Y + L KY++ N I D +
Sbjct: 17 RQHDPYKIIEPTPKKYLEGSAYEVIYNHLSYKHEILDKYIET------NTAVFWIKKDDI 70
Query: 299 IPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNIL----SLRYNARIRVKTYTDE 466
V + L+ H + L +++ +D+ ++ FE+ Y + S + R+RVK
Sbjct: 71 FSVATILR--HLG-YECLSEMSAIDLCAKKGHFELFYQFVGFSDSCKNRRRVRVKCVLLP 127
Query: 467 LTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSG 637
VDS ++++ANW ERE +DM G+ F HP L+R++ + + GHP + +PL G
Sbjct: 128 NESVDSLSFLYRSANWSEREAYDMLGIVFDKHPYLKRLIMPHDWVGHPLLRSYPLKG 184
>UniRef50_Q8R5N2 Cluster: NADH-quinone oxidoreductase; n=2;
Actinomycetales|Rep: NADH-quinone oxidoreductase -
Streptomyces coelicolor
Length = 453
Score = 72.5 bits (170), Expect = 8e-12
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +2
Query: 269 LEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRV 448
L V +PP + I L +D + + + ++ +D P F + ++ +L R+ +
Sbjct: 28 LTVDVPPASWITALETARDRLNCTYFDW--LSAVDEPGTG--FRVAAHVAALGPVRRLLL 83
Query: 449 KTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
+T P + SA V+ A W+ERE +M+GV FA+HP L +L GFEGHP RKDF
Sbjct: 84 RTTVPHDAPALPSAVGVYAGAAWHERETHEMFGVAFADHPALDHLLLPEGFEGHPLRKDF 143
Query: 626 PLSGYV 643
L+ V
Sbjct: 144 VLAARV 149
>UniRef50_A6LXQ3 Cluster: NADH-quinone oxidoreductase; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: NADH-quinone
oxidoreductase - Clostridium beijerinckii NCIMB 8052
Length = 145
Score = 72.5 bits (170), Expect = 8e-12
Identities = 40/132 (30%), Positives = 68/132 (51%)
Frame = +2
Query: 230 KYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIY 409
+Y Q +++ ++ + + V+ +K + F LVD+ ++ + +Y
Sbjct: 15 EYKQDIEIIENTQIAIHTEASKFLDVIKKVKQYG---FDFLVDLTAIE----DDVLSCVY 67
Query: 410 NILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTD 589
+ +SL + IR+K +E + S + AAN ERE +D++G+ F HPDL+RIL
Sbjct: 68 HFMSLTTHELIRIKVKLNEKLEIPSLTKYWLAANVQEREAYDLFGINFIGHPDLKRILCP 127
Query: 590 YGFEGHPFRKDF 625
F GHP RKDF
Sbjct: 128 DDFVGHPLRKDF 139
>UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8;
Bacteroidetes|Rep: NADH dehydrogenase I, chain D -
Bacteroides thetaiotaomicron
Length = 538
Score = 70.1 bits (164), Expect = 4e-11
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +2
Query: 371 DVPSRSNRFEIIYNILSLRYNARIRVKT-YTDELTP-VDSACDVFKAANWYEREIWDMYG 544
D P + ++Y++ S RI +KT TD P + S D++K A++YERE++D YG
Sbjct: 51 DAPEKLRGLGVVYHLESTVTGERIALKTAVTDRERPEIPSVSDIWKIADFYEREVFDYYG 110
Query: 545 VFFANHPDLRRILTDYGFEGHPFRKD 622
+ F HPD+RR+ + G+P RKD
Sbjct: 111 IVFVGHPDMRRLYLRNDWVGYPMRKD 136
>UniRef50_Q6KZ65 Cluster: NADH-quinone oxidoreductase chain C; n=4;
Thermoplasmatales|Rep: NADH-quinone oxidoreductase chain
C - Picrophilus torridus
Length = 151
Score = 68.9 bits (161), Expect = 1e-10
Identities = 38/102 (37%), Positives = 58/102 (56%)
Frame = +2
Query: 359 IAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDM 538
I G+D+ S E++Y+I + N + +K T++ + V S ++KAA+W ERE +D+
Sbjct: 41 ITGVDMKSY---IEVVYHIYNYDKNEYLEIKVDTED-SHVPSLTGLWKAADWDEREQYDL 96
Query: 539 YGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRYDDE 664
G+ F H +LRRIL + GHP RKD+ L V D E
Sbjct: 97 MGIIFDGHENLRRILLPDEWVGHPLRKDYDLKKVQYVSMDRE 138
>UniRef50_A0H050 Cluster: NADH-quinone oxidoreductase; n=2;
Chloroflexus|Rep: NADH-quinone oxidoreductase -
Chloroflexus aggregans DSM 9485
Length = 173
Score = 66.5 bits (155), Expect = 5e-10
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Frame = +2
Query: 278 LIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI--RVK 451
L+ P ++ F++D + +A L DIA +D + FEI+Y + I RV+
Sbjct: 48 LVRPQRLVDAALFVRD--TLGYAYLSDIAVVDY-LYAGCFEIVYRFYHPAGGSSIVLRVR 104
Query: 452 TYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
DE V S + AA+++ERE +D++G+ F HP L RI FEG P RKDFP
Sbjct: 105 VPRDEPV-VPSLTPYWPAAHFHEREAYDLFGIVFTGHPYLHRIYMWDEFEGFPMRKDFPR 163
Query: 632 SG 637
G
Sbjct: 164 QG 165
>UniRef50_Q82DT5 Cluster: NADH-quinone oxidoreductase; n=1;
Streptomyces avermitilis|Rep: NADH-quinone
oxidoreductase - Streptomyces avermitilis
Length = 504
Score = 64.5 bits (150), Expect = 2e-09
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 437 RIRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPF 613
R+ V+T PV +A V+ A W+ERE +M+GV F HP L +L GFEGHP
Sbjct: 100 RLLVRTTVPHEAPVLPTAVGVYAGAGWHERETHEMFGVTFEGHPALDPLLLPEGFEGHPL 159
Query: 614 RKDFPLSGYV 643
RKDF L+ V
Sbjct: 160 RKDFVLAARV 169
>UniRef50_A3ZL04 Cluster: NADH-quinone oxidoreductase; n=1;
Blastopirellula marina DSM 3645|Rep: NADH-quinone
oxidoreductase - Blastopirellula marina DSM 3645
Length = 176
Score = 64.5 bits (150), Expect = 2e-09
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 23/150 (15%)
Frame = +2
Query: 251 LTAGNELEVLIP-----PDAVIPVLSFLKDHHSAQF--ANLVDIAGMDVPSR-------- 385
L A ELE + P P V+ + +L+D +F N + + P
Sbjct: 17 LVARVELEAIDPWIEVEPGGVVELCRYLRDAEDLRFNYCNSICVVDYFEPDAKKAAKTAW 76
Query: 386 SNRFEIIYNILSLRYNARIRVKT----YTD----ELTPVDSACDVFKAANWYEREIWDMY 541
S E++Y++ S++Y + VK + D +L V S ++ A+W+ERE +D+
Sbjct: 77 SPHLEVVYHLSSIQYKTTLVVKVMLPRWKDGVPGQLPEVPSVSGIWSTADWHEREAYDLS 136
Query: 542 GVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
GV+F HP+L+RIL + G+P RKD+ +
Sbjct: 137 GVWFTGHPNLQRILCPEDWVGYPLRKDYEM 166
>UniRef50_Q5KUJ7 Cluster: NADH-quinone oxidoreductase; n=12;
Bacillaceae|Rep: NADH-quinone oxidoreductase -
Geobacillus kaustophilus
Length = 497
Score = 64.1 bits (149), Expect = 3e-09
Identities = 36/117 (30%), Positives = 58/117 (49%)
Frame = +2
Query: 275 VLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKT 454
+++ +A V LK H +F L ++ G D + + +Y+ + R ++VK
Sbjct: 376 LVVKKEAYYKVAELLKGHEQLRFDYLSELHGTDFQTHMEVYVHLYSYPN-RQPVALKVKI 434
Query: 455 YTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
D VDS ++ ANW E E +D+ G+ F HP+L RI + GHP RKD+
Sbjct: 435 ERDN-PEVDSLVPLWPGANWPECEAYDLLGIRFRGHPNLIRIFLGEQWVGHPLRKDY 490
>UniRef50_Q6ANM6 Cluster: NADH-quinone oxidoreductase; n=1;
Desulfotalea psychrophila|Rep: NADH-quinone
oxidoreductase - Desulfotalea psychrophila
Length = 157
Score = 63.7 bits (148), Expect = 4e-09
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Frame = +2
Query: 260 GNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSL-RYNA 436
G L +++ PD +I ++ L + F L I G+D P + E +Y+ ++
Sbjct: 37 GYYLNIVVSPDLLIETVTVLDE--LGYF--LESITGVDWP-KEEEIESVYDFNRYDEHSF 91
Query: 437 RIRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPF 613
RI ++T T TPV S V+ ANW+ERE D +G+ F HP L +L + HP
Sbjct: 92 RIVIRTRTSRDTPVIPSITSVYNGANWHERETRDFFGIDFTGHPHLIPLLLPEDADFHPL 151
Query: 614 RKDF 625
KDF
Sbjct: 152 LKDF 155
>UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain D - Sulfurovum sp. (strain NBC37-1)
Length = 547
Score = 63.7 bits (148), Expect = 4e-09
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +2
Query: 290 DAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTD-- 463
D ++ V + LK+ L ++ D P NR E+ Y LR + +K
Sbjct: 32 DDLVSVANALKEKG---LKTLSTVSPTDFPDE-NRIEMNYFFEDLRSKRNVWLKCNIPRE 87
Query: 464 -ELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGH-PFRKDF 625
E + S + F AANW+ERE + M+GV F HPDLR I+ F G PFR+DF
Sbjct: 88 VEACRIASLTEAFPAANWHEREAYSMFGVTFVGHPDLRPIIVSEDFVGKTPFRRDF 143
>UniRef50_Q980H4 Cluster: NADH dehydrogenase subunit C; n=4;
Sulfolobaceae|Rep: NADH dehydrogenase subunit C -
Sulfolobus solfataricus
Length = 169
Score = 63.7 bits (148), Expect = 4e-09
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Frame = +2
Query: 212 VADCLPKYVQKVQLTAGNELEVLIPPDAVI-PVLSFLKDHHSAQFANLVDIAGMDVPSRS 388
V D K+ + ++ + + V++P +I V SFLKD F ++ + G+D P
Sbjct: 14 VNDLQTKFKCQAKIESDRRITVIVPDKKIIRDVASFLKDFG---FDHVKAVTGIDYPEHE 70
Query: 389 NRFEIIYNILSLRYN--ARI--RVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFF 553
+ E++Y+I S A+I ++T P + S +F++A ERE ++M G+ F
Sbjct: 71 -KLEVVYHISSYSNLDLAKIILALRTTVSYKDPSLPSLYSIFESAWTGERETYEMLGIRF 129
Query: 554 ANHPDLRRILTDYGFEG-HPFRKDFPL 631
HPDLRR D FEG +P RK + +
Sbjct: 130 EGHPDLRRFFLDEDFEGVYPLRKSYKI 156
>UniRef50_A1RZ49 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 161
Score = 62.9 bits (146), Expect = 7e-09
Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Frame = +2
Query: 335 AQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNAR---IRVKTYTDELTPVD-SACDVFK 502
A F +L + G+D PS+ E++Y+ S R V+ PV S DV+
Sbjct: 49 AGFDHLASVEGIDWPSKGV-IEVVYHAESYEPEKRRFLFEVRVQLPREKPVTPSLFDVWP 107
Query: 503 AANWYEREIWDMYGVFFANHPDLRRILTDYGFEG-HPFRKDF 625
A + ERE W+M GV F HP+LRR+L G+EG P RKDF
Sbjct: 108 NALFMERETWEMLGVIFEGHPELRRLLLPPGWEGPPPLRKDF 149
>UniRef50_Q0LPS8 Cluster: NADH-quinone oxidoreductase; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: NADH-quinone
oxidoreductase - Herpetosiphon aurantiacus ATCC 23779
Length = 178
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Frame = +2
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNA--- 436
+ + ++ +A++ V F++D + L +I +D + E++Y +
Sbjct: 45 DFDAVVKAEALVEVAHFIRDKFG--YTLLSNITAVDY-LKQGLIEVVYQFYNAAEGGPDL 101
Query: 437 RIRVKT-YTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPF 613
R+RV+ + E V S + A+ ERE +DMYGV F HP+L RI F+G P
Sbjct: 102 RVRVRIGRSPEECIVPSLTPTWPGADLQEREAYDMYGVVFPGHPNLARIYMWDEFKGFPM 161
Query: 614 RKDFPLSG 637
RKDFP +G
Sbjct: 162 RKDFPKTG 169
>UniRef50_A3DM93 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Staphylothermus marinus F1|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 184
Score = 62.1 bits (144), Expect = 1e-08
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Frame = +2
Query: 260 GNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNAR 439
G +E+ I P + VL +KD A + + + I +D P N FE++Y I S+ N +
Sbjct: 27 GKRIEITIEPQDLCKVLPAIKD---AGYDHFIGITVIDYPDE-NVFELVYLIDSISKNGQ 82
Query: 440 -IRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEG-HP 610
+ ++T PV D+A ++ A + E E ++ +GV F NH LR+ + + ++G P
Sbjct: 83 LVAIRTKLPRDNPVIDTASFIYPLAYYQEIEAYEFFGVRFNNHDGLRKWILEDNWQGPPP 142
Query: 611 FRKDFPLSGYVXVRY 655
FRKD V Y
Sbjct: 143 FRKDIDTRDIVLKLY 157
>UniRef50_A1G328 Cluster: NADH-quinone oxidoreductase; n=1;
Salinispora arenicola CNS205|Rep: NADH-quinone
oxidoreductase - Salinispora arenicola CNS205
Length = 235
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 395 FEIIYNILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDL 571
F+++ ++ S + + ++T P V S V+ A W+ERE +M+G+ F +H L
Sbjct: 72 FDVVVHLWSTAHRHGLLLRTRVPRTAPRVASVVTVYPGAAWHERETHEMFGIDFVDHAGL 131
Query: 572 RRILTDYGFEGHPFRKDFPLSGYV 643
+ +L FEGHP RKDF L+ V
Sbjct: 132 KPLLLPPEFEGHPLRKDFVLASRV 155
>UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 562
Score = 61.3 bits (142), Expect = 2e-08
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = +2
Query: 278 LIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNAR-IRVKT 454
+I DAV VLS LK A F +L + + +RFE IY++ + + +
Sbjct: 49 VIRADAVQDVLSTLKTE--AGFDHLSCVTAEE---HEDRFESIYHLRKYDDPTQEVSIIV 103
Query: 455 YTDELTPVDSACD-VFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 631
T PV + VF+ A+W+ERE +D+ GV + +HP+L RIL ++GHP D+
Sbjct: 104 PTSRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHPNLERILLPDTWQGHPLGLDYNQ 163
Query: 632 SGYVXVRYDD 661
+ V +D+
Sbjct: 164 NKPQIVTFDE 173
>UniRef50_A5UXK2 Cluster: NADH-quinone oxidoreductase; n=2;
Roseiflexus|Rep: NADH-quinone oxidoreductase -
Roseiflexus sp. RS-1
Length = 168
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 398 EIIYNILSLRYNARIRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLR 574
E++Y+ L + +KT PV S D + AN ERE +D++GV F HP+L
Sbjct: 79 EMVYHFFHLDGGPALVIKTRVPRDHPVVPSLTDEWPGANLQEREAFDLFGVVFTGHPNLT 138
Query: 575 RILTDYGFEGHPFRKDFPLSG 637
RI FEG P RKDFP G
Sbjct: 139 RIYMWDEFEGWPMRKDFPKQG 159
>UniRef50_Q2AP22 Cluster: NADH-quinone oxidoreductase; n=1; Bacillus
weihenstephanensis KBAB4|Rep: NADH-quinone
oxidoreductase - Bacillus weihenstephanensis KBAB4
Length = 485
Score = 60.5 bits (140), Expect = 4e-08
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +2
Query: 287 PDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDE 466
P V+ ++ H F + ++ D + E+ ++ S + VK D
Sbjct: 368 PSKYYEVMELMRLHEGLAFDYMSELHATDFVTH---MEVYVHLFSYGKKQSVAVKVKLDR 424
Query: 467 LTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 625
P V S ++K A+W ERE +D+ G+ F HP+L RIL + G+P RKD+
Sbjct: 425 EAPQVKSVTPLWKGADWPERETYDLLGIVFEGHPNLSRILMPDDWVGYPLRKDY 478
>UniRef50_Q1NLI0 Cluster: NADH-quinone oxidoreductase; n=3; delta
proteobacterium MLMS-1|Rep: NADH-quinone oxidoreductase
- delta proteobacterium MLMS-1
Length = 208
Score = 59.7 bits (138), Expect = 6e-08
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 383 RSNRFEIIYNILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFAN 559
+ + FE++Y+ + R+ ++ P + + D++ ANW+ERE D +G+ F
Sbjct: 125 QEDSFEVVYDFNHFQELCRVTLRVRVPRSLPQLPTISDIYPGANWHEREAHDFFGLVFTG 184
Query: 560 HPDLRRILTDYGFEGHPFRKDF 625
HPDL +L + HP RKD+
Sbjct: 185 HPDLSPLLLPEDADFHPLRKDY 206
>UniRef50_P19125 Cluster: NAD(P)H-quinone oxidoreductase subunit J
(EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit J); n=39;
Cyanobacteria|Rep: NAD(P)H-quinone oxidoreductase
subunit J (EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit
J) - Synechocystis sp. (strain PCC 6803)
Length = 179
Score = 59.3 bits (137), Expect = 8e-08
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Frame = +2
Query: 407 YNILSLRYNAR----IRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDL 571
Y+++ L + R +R+K + PV S ++KAA+W ERE +DM+G+ + HP+L
Sbjct: 90 YHLVKLTEDTRNPEEVRLKVFLPRENPVVPSVYWIWKAADWQERECYDMFGIVYEGHPNL 149
Query: 572 RRILTDYGFEGHPFRKDF 625
+RIL + G P RKD+
Sbjct: 150 KRILMPEDWVGWPLRKDY 167
>UniRef50_Q9V0S6 Cluster: NuoC NADH dehydrogenase I, subunit C,
putative; n=4; Thermococcaceae|Rep: NuoC NADH
dehydrogenase I, subunit C, putative - Pyrococcus abyssi
Length = 174
Score = 58.4 bits (135), Expect = 1e-07
Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Frame = +2
Query: 269 LEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRY--NARI 442
LE +P + + LS +K+H+ F ++ I+ +D + E++Y+++++ +A +
Sbjct: 30 LEFKVPVERLREFLSVMKEHN---FPLMLQISAVDW-LKEGEIELVYHLMNIELGTHAMV 85
Query: 443 RVKTYTD-ELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRR--ILTDYGFEGHPF 613
+V+ D E V + D++ AA YER++ D +GV+F + + IL D +P
Sbjct: 86 KVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVYFEGNDKMEMPWILDDPERGLYPH 145
Query: 614 RKDFPLSGYVXVRY 655
RKDF + YV +Y
Sbjct: 146 RKDFNMLEYVKRKY 159
>UniRef50_A0RY67 Cluster: NADH-ubiquinone oxidoreductase, subunit C;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit C - Cenarchaeum symbiosum
Length = 270
Score = 58.4 bits (135), Expect = 1e-07
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Frame = +2
Query: 131 PPXQETRPTVAKLDPLQKAQ-LVDFGKYVADCLP-KYVQKVQLT--AGNELEVLIPPDAV 298
PP + P P ++ + L +F K + D + K+ + Q++ +++ +
Sbjct: 86 PPADKAAPPKPAAPPAKEEEKLPEFEKGLTDRITEKFGDRAQVSFVQPRRTRIMVKSPDI 145
Query: 299 IPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYN------------ILSLRYNA-R 439
V F++D F + +AG+D P + E++Y+ +L+L A R
Sbjct: 146 KEVAEFIRDE--LNFDHAESVAGVDYPE-NGEIEVVYHLGSYLDPSLSGQVLALATRAPR 202
Query: 440 IRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGF-EGHPFR 616
V ++ T + S DVF + ++ERE ++M GV+F HPD RR+L + + P R
Sbjct: 203 EDVPDPGNDSTRLPSLRDVFYSVEFHERECFEMLGVYFEGHPDNRRLLLPEDWADLPPLR 262
Query: 617 KDFPLSG 637
KDF + G
Sbjct: 263 KDFAIKG 269
>UniRef50_Q67KN8 Cluster: NADH-quinone oxidoreductase; n=1;
Symbiobacterium thermophilum|Rep: NADH-quinone
oxidoreductase - Symbiobacterium thermophilum
Length = 156
Score = 56.4 bits (130), Expect = 6e-07
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFE-GHPFRKDF 625
+ S +++ ANW+ERE +DMYG+ F HP+ RRIL ++ GHP KDF
Sbjct: 89 IPSIANLYPGANWHERETYDMYGIRFDGHPNHRRILLPDNWQGGHPLLKDF 139
>UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aquifex
aeolicus|Rep: NADH dehydrogenase I chain D - Aquifex
aeolicus
Length = 593
Score = 55.6 bits (128), Expect = 1e-06
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Frame = +2
Query: 218 DCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLK---------DHHSAQFANLVD---- 358
+ L + Q + N V++P D +I VL +LK DH +L++
Sbjct: 11 ELLKAFPQASVVELQNSTSVIVPKDILIDVLKYLKEKLGYKLFLDHSVVDLKDLLENEKE 70
Query: 359 ---IAGMDV----PSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWY 517
+ ++ R +RF+ Y + ++ R+ VKT T+ P ++ A W
Sbjct: 71 FNKVVKQNLIAFPEDRESRFQAFYILYNVDERKRVIVKTRTNGKLPTIEK--LWFAGKWA 128
Query: 518 EREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSG 637
ERE +DM+G+ + H +L R + P RKDFPL G
Sbjct: 129 ERECYDMFGIEYEGHENLVRAFMWDTYPYFPLRKDFPLEG 168
>UniRef50_Q9X0U2 Cluster: NADH-quinone oxidoreductase; n=3;
Thermotogaceae|Rep: NADH-quinone oxidoreductase -
Thermotoga maritima
Length = 177
Score = 55.2 bits (127), Expect = 1e-06
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Frame = +2
Query: 266 ELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIR 445
E+++ + PD VI VL LK S +++L + +D S +FE++Y + S + +
Sbjct: 28 EVKLSVAPDRVIAVLETLK---SLGYSHLSLMTCIDWIEDS-QFELVYILFSWKDGGKFI 83
Query: 446 VKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
V T D P + +++ A +YEREI + +GV F+ + D++ + + + P RKD
Sbjct: 84 VTTRIDRNNPQFVTVKEIWPVARFYEREIHEFFGVKFSGNEDMKPLFLELWDDKPPLRKD 143
Query: 623 F 625
F
Sbjct: 144 F 144
>UniRef50_A2BJ95 Cluster: NAD(P)H-quinone oxidoreductase subunit J;
n=1; Hyperthermus butylicus DSM 5456|Rep:
NAD(P)H-quinone oxidoreductase subunit J - Hyperthermus
butylicus (strain DSM 5456 / JCM 9403)
Length = 174
Score = 54.8 bits (126), Expect = 2e-06
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Frame = +2
Query: 275 VLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNIL-SLRYNARIRVK 451
+++ PD + V++ LK+ + L+ I+G+D P + R I+Y+ S + V+
Sbjct: 25 LVVEPDRIREVVAELKN---TGYDYLLSISGVDEPD-AKRIRIVYHFARSSNPGDVVAVE 80
Query: 452 TYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGF-EG-HPFRKD 622
T PV DS DV+ AA +ERE +M G+ F +PD R +L + EG +P RKD
Sbjct: 81 TVVPRDEPVIDSIHDVYPAALLHEREEHEMLGIVFRGNPDSRHLLLPEDWPEGVYPLRKD 140
Query: 623 F 625
F
Sbjct: 141 F 141
>UniRef50_A4M716 Cluster: NADH-quinone oxidoreductase; n=1;
Petrotoga mobilis SJ95|Rep: NADH-quinone oxidoreductase
- Petrotoga mobilis SJ95
Length = 184
Score = 54.4 bits (125), Expect = 2e-06
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
NE+ +++ + + +L++LKD Q + + + + + N+FE++Y + +
Sbjct: 29 NEISIVVEQNNLPTILTYLKDKGWKQLSLITCVDWI----KENKFELVYVLFNWANGITF 84
Query: 443 RVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRR-ILTDYGFEGHPFR 616
VKT + P S D+F A +YER+I + +GV F + D + + + + P R
Sbjct: 85 VVKTKIERENPEYISIIDIFPGARYYERDIHEFFGVKFEGNSDSEKPLFLELWDDKPPMR 144
Query: 617 KDFPLSGYVXVRYDD 661
KDF Y ++ D
Sbjct: 145 KDFDPLEYSKRKFPD 159
>UniRef50_Q1K3R3 Cluster: NADH-quinone oxidoreductase; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: NADH-quinone
oxidoreductase - Desulfuromonas acetoxidans DSM 684
Length = 171
Score = 53.2 bits (122), Expect = 5e-06
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = +2
Query: 350 LVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREI 529
LVD+ + V + E++Y + R+ + + +E + + + D++ ANW+ERE
Sbjct: 52 LVDLMAVHV---NPAVEVVYQFAHVETRCRVMARAFVNEKSELPTIADIYHGANWHERET 108
Query: 530 WDMYGVFFANHPDLRRIL 583
D +GV F HP+L ++
Sbjct: 109 RDFHGVVFVGHPNLEPLI 126
>UniRef50_A7BSF0 Cluster: NADH dehydrogenase subunit C; n=1;
Beggiatoa sp. PS|Rep: NADH dehydrogenase subunit C -
Beggiatoa sp. PS
Length = 177
Score = 52.8 bits (121), Expect = 7e-06
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Frame = +2
Query: 269 LEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRV 448
L V + DA+ +L LK A + +L I+ +D P+ + FE++Y++ S +
Sbjct: 29 LRVKLRSDALPALLELLKGR--AGYLHLSAISCVDWPTL-DEFELVYHLWSYEVKNLVSA 85
Query: 449 KTYTDELTP--VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
Y + TP S D++ A ++ER+I +M+GV+F PDL + + P K
Sbjct: 86 HIYIPK-TPGRYISVYDIYTPAAFFERDIHEMFGVYFEGCPDLEPFILTEWYGPPPMLKS 144
Query: 623 FPLSGYVXVRY 655
F YV Y
Sbjct: 145 FSTLDYVKETY 155
>UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Staphylothermus marinus F1|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 548
Score = 52.0 bits (119), Expect = 1e-05
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Frame = +2
Query: 206 KYVADCLPKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSR 385
+++ + L V++ + L + I + + + + + +A F +V + D S
Sbjct: 10 QHIIEKLGDIVKETKYIGDQALMLRIDRNYLRKAVDIIHNDLNAYFRTMVAV---DERSL 66
Query: 386 SNRFEIIYNILSLRYNARIRVKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANH 562
+ F Y + I VKT+T PV S D+ AA+WYE E WD+ G+ F N
Sbjct: 67 NGTFASYYIFGLDAAHLNIIVKTHTSADEPVLPSIIDIVPAADWYELEAWDLLGIKFENR 126
Query: 563 PDLRRILTDYGFEG-HPFRKD 622
R +L D EG +P RKD
Sbjct: 127 KVHRFVLPDEWPEGIYPLRKD 147
>UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Pelobacter
propionicus (strain DSM 2379)
Length = 557
Score = 50.4 bits (115), Expect = 4e-05
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Frame = +2
Query: 236 VQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNI 415
+Q+ + L V I P +V P+ ++ A++ ++ I D P S +F + +
Sbjct: 17 IQQADVVNDMRLLVYIDPASVKPICQYIFRDMDARY--VISIGSDDRPY-SGKFLVFHQF 73
Query: 416 LSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRR-ILTD 589
+ + P +DS + AANW ERE+ D+ G+ HP +R +L D
Sbjct: 74 AFDKEKILFSIICQLPGENPRIDSISGIIPAANWAERELKDLLGIEPVGHPYPKRLVLPD 133
Query: 590 YGFEG-HPFRKDFPLSGYVXVRYDDE 664
+G HP RKDF + + YD+E
Sbjct: 134 AWPDGHHPLRKDFAWN-KIPEGYDEE 158
>UniRef50_A3THF4 Cluster: NADH-quinone oxidoreductase; n=1;
Janibacter sp. HTCC2649|Rep: NADH-quinone oxidoreductase
- Janibacter sp. HTCC2649
Length = 177
Score = 50.0 bits (114), Expect = 5e-05
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +2
Query: 440 IRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPD-----LRRILTDYGFEG 604
IR+ T E + S DV+ A W+ERE +M+GV F D +R +L GFEG
Sbjct: 67 IRLTTRVAEGAAIVSVTDVYAGAAWHERETHEMFGVEFTGFDDGSGSGMRPLLLPEGFEG 126
Query: 605 HPFRKDFPLS 634
P RK F L+
Sbjct: 127 TPLRKSFVLA 136
>UniRef50_P56754 Cluster: NAD(P)H-quinone oxidoreductase chain J,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
J); n=174; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase chain J, chloroplast (EC 1.6.5.-)
(NAD(P)H dehydrogenase, chain J) - Arabidopsis thaliana
(Mouse-ear cress)
Length = 158
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +2
Query: 404 IYNILSLRYNAR----IRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPD 568
+Y++ + Y + +K +T P + S V+K+ ++ ERE +DM G+ + +HP
Sbjct: 68 VYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPR 127
Query: 569 LRRILTDYGFEGHPFRKDF 625
L+RIL + G P RKD+
Sbjct: 128 LKRILMPESWIGWPLRKDY 146
>UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: NADH-ubiquinone
oxidoreductase - Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255)
Length = 561
Score = 49.6 bits (113), Expect = 7e-05
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 371 DVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGV 547
D+ + ++IIY + + TD P V + D+ A+W+ERE +DM GV
Sbjct: 61 DMGPVTGEYDIIYAFSLDAEGILLTLTEPTDPKDPKVPTLTDLIPGADWHERENYDMLGV 120
Query: 548 FFANHPDLRRIL--TDYGFEGHPFRKDFP 628
HP+ RR+L D+ + P RKDFP
Sbjct: 121 VAEGHPNPRRLLLSEDWPEDLFPMRKDFP 149
>UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein;
n=1; uncultured methanogenic archaeon RC-I|Rep:
Hydrogenase, large subunit-like protein - Uncultured
methanogenic archaeon RC-I
Length = 524
Score = 48.8 bits (111), Expect = 1e-04
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +2
Query: 260 GNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNAR 439
GN + V DA+ V SF+ + A A L +A + + + S
Sbjct: 25 GNNVFVRAGKDALPYVASFVAKRYGASLATL-HVADTRQMTGGYTMYAVMPVASENLIVS 83
Query: 440 IRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLR-RILTD-YGFEGHPF 613
I + T S + +ANW+EREI DM+G+ HPDLR +L D + + HP
Sbjct: 84 IEAEVPESPGT-FQSLTPMIYSANWFEREIADMFGLTPVGHPDLRPLVLYDTWPEDYHPL 142
Query: 614 RKDFP 628
RKD P
Sbjct: 143 RKDAP 147
>UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 567
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 470 TPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRR-ILTDYGFEG-HPFRKDF 625
T S AA+WYERE+ D+ G+ NHPD RR +L D EG HP RK+F
Sbjct: 101 TKFSSVTPKIPAASWYEREVRDLLGLVPENHPDPRRLVLPDDWPEGVHPLRKEF 154
>UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium
cellulolyticum H10|Rep: NADH dehydrogenase - Clostridium
cellulolyticum H10
Length = 530
Score = 48.4 bits (110), Expect = 2e-04
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = +2
Query: 350 LVDIAGMDVPSRSNRFEIIYNILSLRYNARIRV--KTYTDELTPVDSACDVFKAANWYER 523
LV + D N+ + Y N I + K D VDS AA+ YER
Sbjct: 53 LVGLFANDTTPIDNKLTVYYTFAVRSSNTLITLYSKLENDGSAKVDSIALEVPAASLYER 112
Query: 524 EIWDMYGVFFANHPDLRRIL--TDYGFEGHPFRKDF 625
EI DMYG+ F PD R ++ ++ + HP R++F
Sbjct: 113 EIHDMYGIVFEELPDSRELVHHGNFPLDVHPLRRNF 148
>UniRef50_Q5SD02 Cluster: NAD(P)H-quinone oxidoreductase; n=3;
Lycopodiophyta|Rep: NAD(P)H-quinone oxidoreductase -
Huperzia lucidula (Shining clubmoss) (Lycopodium
lucidulum)
Length = 172
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 446 VKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKD 622
+K + P + S ++K+A++ ERE +DM G+ + NHP L+RIL + G P RKD
Sbjct: 100 IKVFVPREDPKIPSVFWIWKSADFQERESYDMSGITYENHPHLKRILMPDTWIGWPLRKD 159
Query: 623 F 625
+
Sbjct: 160 Y 160
>UniRef50_Q1PZL4 Cluster: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit - Candidatus
Kuenenia stuttgartiensis
Length = 531
Score = 46.8 bits (106), Expect = 5e-04
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Frame = +2
Query: 263 NELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARI 442
NE+ V + ++ V ++KD +A ++++ D + F+I Y R + +
Sbjct: 30 NEIYVSTKKENLLNVCLYIKDIFNAVLSSMIC---NDERTLDKHFKIYYVFSLQREDTFL 86
Query: 443 RVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGF--EGHPF 613
V E P S AA+WYEREI DM+G+ HP ++ F +P
Sbjct: 87 IVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMFGLIPVGHPRPETLVLHGNFPENTYPL 146
Query: 614 RKDFPL 631
RKDF +
Sbjct: 147 RKDFDI 152
>UniRef50_A0LEQ0 Cluster: NADH-quinone oxidoreductase; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: NADH-quinone
oxidoreductase - Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB)
Length = 157
Score = 46.8 bits (106), Expect = 5e-04
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 398 EIIYNILSLRYNAR--IRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDL 571
E++Y+ +R +RV D+ P S +F +A W ERE+ + +G+ FA DL
Sbjct: 68 ELVYHFNCYEPGSRFALRVLCGHDQTPPTIST--IFASAGWLEREVHEFFGIQFAGSFDL 125
Query: 572 RRILTDYGFEGHPFRKDF 625
R +L E HP RK F
Sbjct: 126 RPLLLPEDAEFHPLRKTF 143
>UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n=1;
unknown|Rep: UPI00015BC86A UniRef100 entry - unknown
Length = 420
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Frame = +2
Query: 509 NWYEREIWDMYGVFFANHPDLRRIL---TDYGFEGHPFRKDFPLS----GYVXVRYDD 661
+WYEREI+DM+G+ HP+LR ++ +Y + HP RKD ++ GY Y+D
Sbjct: 7 DWYEREIYDMFGLIPEGHPNLRPLMLFPENYPKDFHPLRKDANMNIKYEGYKTYPYED 64
>UniRef50_O28446 Cluster: F420H2:quinone oxidoreductase, 39.7 kDa
subunit, putative; n=4; Archaea|Rep: F420H2:quinone
oxidoreductase, 39.7 kDa subunit, putative -
Archaeoglobus fulgidus
Length = 353
Score = 46.4 bits (105), Expect = 6e-04
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Frame = +2
Query: 197 DFGKYVADCLPKYVQ--KVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGM 370
+FG+ + + + V+ V +T N + V + D + L++ F ++ ++ +
Sbjct: 198 EFGQKLVEEIKAKVEAKSVTITGKNRIAVKVESDYIPRAAMRLRE---MGFDHVKNVNVI 254
Query: 371 DVPSRSNRFEIIYNI--LSLRYNARIRVKTYTD---ELTPVDSACDVFKAANWYEREIWD 535
DVP+ ++F + Y+ S++ + V + D E V S +F +A++ ERE+ D
Sbjct: 255 DVPNE-DKFIVEYHFSSYSVKELMPVIVNVFADIPRENPRVKSLASMFPSADYMEREMHD 313
Query: 536 MYGVFFANHPDL-RRILTDYGFEGHPFRKDFPLSGYVXVR 652
+GV F +P + R+ L P RKDF L V VR
Sbjct: 314 FFGVIFEGNPWMGRKFLLAPDAPEFPLRKDFKLEEEVYVR 353
>UniRef50_Q09F09 Cluster: NADH-ubiquinone oxidoreductase; n=7;
Tetrahymena|Rep: NADH-ubiquinone oxidoreductase -
Tetrahymena pigmentosa
Length = 198
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 389 NRFEIIYNILSLRYNARIRVKTYTDELTPVDSACD-VFKAANWYEREIWDMYGVFFANHP 565
N+ + YN + ++ + L+ ++ D +F ANW ERE +MYG+ +
Sbjct: 92 NKLLVFYNYYNYFLKNKLTFFIILNSLSKNMNSIDRIFSNANWLERETSEMYGINYKWKT 151
Query: 566 DLRRILTDYGFEGHPFRKDFPLSG 637
D R++L DY +P K+F G
Sbjct: 152 DTRKLLLDYSKIENPMLKEFQCEG 175
>UniRef50_A6DAC1 Cluster: NADH-quinone oxidoreductase; n=1;
Caminibacter mediatlanticus TB-2|Rep: NADH-quinone
oxidoreductase - Caminibacter mediatlanticus TB-2
Length = 156
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLS 634
VDS + K+A+W ERE +MYG+ NHP+ +R+ D + + PLS
Sbjct: 81 VDSITPILKSASWAEREFKEMYGIEPINHPNPKRLFLDDSIDEEVLARFIPLS 133
>UniRef50_Q9YC25 Cluster: NuoC homolog; n=1; Aeropyrum pernix|Rep:
NuoC homolog - Aeropyrum pernix
Length = 189
Score = 45.2 bits (102), Expect = 0.001
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Frame = +2
Query: 341 FANLVDIAGMDVPSRSNRFEIIYNILSLRYNAR------IRVKTYTDELTPVDSACDVFK 502
F ++V I +D + +F ++Y++ S A + V+ E + S ++
Sbjct: 71 FDHVVSITTIDY-LKEKKFRVVYHVSSYLDAALKGAIVGLGVELPRVEKPSIPSLSQIWI 129
Query: 503 AANWYEREIWDMYGVFFANHPDLRR-ILTDYGFEGHPFRKDF 625
+A + ERE+++ +G+ F HPDLR +LT E P RKDF
Sbjct: 130 SAEFQEREVYEFFGIEFEGHPDLRPFLLTPPVAEKRPLRKDF 171
>UniRef50_P15600 Cluster: NADH-ubiquinone oxidoreductase subunit 9;
n=6; Paramecium|Rep: NADH-ubiquinone oxidoreductase
subunit 9 - Paramecium tetraurelia
Length = 209
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +2
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRY 655
V S + ANW EREI +M+ + R +L DYG +PF K FP +G+ V +
Sbjct: 133 VSSLESFYSNANWLEREISEMFRGSNLLKKESRNLLLDYGSSFNPFLKKFPSTGHAEVVF 192
Query: 656 D 658
+
Sbjct: 193 N 193
>UniRef50_P72319 Cluster: NADH-quinone oxidoreductase; n=3;
Alphaproteobacteria|Rep: NADH-quinone oxidoreductase -
Rhodospirillum rubrum
Length = 172
Score = 42.3 bits (95), Expect = 0.010
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 440 IRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRK 619
+ VK + +DS +F+ A+W+ERE + Y + + D +R+ D EG +
Sbjct: 85 VTVKVWVVSGGSIDSIMTLFRNADWHEREFMEFYKIEVKDRADAKRLFLDESIEGGAMER 144
Query: 620 DFPLS 634
PLS
Sbjct: 145 LIPLS 149
>UniRef50_Q8KPP8 Cluster: NugC; n=1; Synechococcus elongatus PCC
7942|Rep: NugC - Synechococcus sp. (strain PCC 7942)
(Anacystis nidulans R2)
Length = 181
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 440 IRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHP 565
+RVK + P V S ++K A+W ERE +DMYG+ F HP
Sbjct: 86 VRVKVFLPRHDPKVPSVFWIWKGADWQERETFDMYGIQFEGHP 128
>UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4;
Methanomicrobia|Rep: Hydrogenase-3, subunit E -
Methanosarcina acetivorans
Length = 545
Score = 41.5 bits (93), Expect = 0.018
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRI-LTDYGFEG-HPFRKDF 625
V S +F +A+W+EREI D +G+ FA D RR+ L + EG HP +K F
Sbjct: 99 VSSVAGIFPSASWFEREIRDGFGLDFAGALDNRRLFLHECYHEGFHPLQKAF 150
>UniRef50_A4M374 Cluster: NADH-quinone oxidoreductase; n=1;
Geobacter bemidjiensis Bem|Rep: NADH-quinone
oxidoreductase - Geobacter bemidjiensis Bem
Length = 175
Score = 41.1 bits (92), Expect = 0.023
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGY 640
V S +F+ +W+ERE+ ++Y + HPD RR+ PF + P S +
Sbjct: 101 VPSLTPIFRNCDWHERELMELYEIQVVGHPDPRRLFLADSVPDAPFERLIPYSTF 155
>UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precursor;
n=50; Bacteria|Rep: Formate hydrogenlyase subunit 5
precursor - Escherichia coli (strain K12)
Length = 569
Score = 40.7 bits (91), Expect = 0.031
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 404 IYNILSLRYNAR--IRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLR 574
+Y +LS+ + I V+ D P S AA W ERE+ DMYG+ PD R
Sbjct: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133
Query: 575 RIL--TDYGFEGHPFRKD 622
R++ D+ E +P RKD
Sbjct: 134 RLVLPDDWPDELYPLRKD 151
>UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19;
Bacteria|Rep: Hydrogenase-4 component G - Escherichia
coli (strain K12)
Length = 555
Score = 40.3 bits (90), Expect = 0.041
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 503 AANWYEREIWDMYGVFFANHPDLRRIL--TDYGFEGHPFRKD 622
AA W EREI DMYG+ PD RR++ D+ + HP RKD
Sbjct: 113 AAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154
>UniRef50_Q3AB36 Cluster: NADH-quinone oxidoreductase; n=2;
Clostridiales|Rep: NADH-quinone oxidoreductase -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 180
Score = 39.5 bits (88), Expect = 0.071
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLS 634
V+S + K+A+W ERE+ ++YG+ HP+ +R+ D + PLS
Sbjct: 102 VNSITPILKSADWTERELQELYGIKVVGHPNPKRLFLDDTIDEGIMNDFIPLS 154
>UniRef50_A0L9R5 Cluster: NADH-quinone oxidoreductase; n=1;
Magnetococcus sp. MC-1|Rep: NADH-quinone oxidoreductase
- Magnetococcus sp. (strain MC-1)
Length = 178
Score = 39.5 bits (88), Expect = 0.071
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Frame = +2
Query: 275 VLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNA---RIR 445
+ +P + VL L+D F +LV + +D N+F++ Y +LS R A +R
Sbjct: 29 ITVPQAQLQDVLIRLRDREG--FTHLVLLTAVDW-IEDNQFQLTY-LLSNREAAVDLGLR 84
Query: 446 VKTYTDELTPVDSACDV-FKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEG-HPFRK 619
V DE PV S+ + + A Y+RE+ +M+G+ F + P + G+ P+R+
Sbjct: 85 VMIPRDE--PVMSSIHIIWPTAATYQRELKEMFGIDFLDSPGIDEPFILEGWSDIPPYRR 142
Query: 620 DFPLSGYVXVRYDD 661
DF Y Y +
Sbjct: 143 DFDTKKYAEETYSN 156
>UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase,
chain 49kDa; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa - Ignicoccus
hospitalis KIN4/I
Length = 540
Score = 38.3 bits (85), Expect = 0.16
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 359 IAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTD-ELTPVDSACDVFKAANWYEREIWD 535
+ +D P+ + ++ + + +R + + + T D E + S ++ W+E E ++
Sbjct: 43 LTAVDWPAEK-KVQVFFLVHRIRDASSVVLSTKVDRENRELPSLSSLYPGVEWHENETYE 101
Query: 536 MYGVFFANHPDLRR 577
M+G+ F HPD R
Sbjct: 102 MFGINFTGHPDYER 115
>UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate
hydrogen lyase, subunit 5; n=1; Pyrococcus abyssi|Rep:
Hydrogenase 4, component G or formate hydrogen lyase,
subunit 5 - Pyrococcus abyssi
Length = 588
Score = 38.3 bits (85), Expect = 0.16
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 431 NARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRIL--TDYGFE 601
N + +K Y D P S AA W ERE+ D+ G NHPD RR++ D+
Sbjct: 108 NYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPEDWPDG 167
Query: 602 GHPFRK 619
+P RK
Sbjct: 168 VYPLRK 173
>UniRef50_A1VC20 Cluster: NADH-quinone oxidoreductase; n=2;
Desulfovibrio vulgaris subsp. vulgaris|Rep: NADH-quinone
oxidoreductase - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 181
Score = 37.9 bits (84), Expect = 0.22
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 428 YNARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEG 604
+ + V D +P V S F+ A+W ERE +MY + HP+ RR+ D +
Sbjct: 88 HGTTLTVTVVLDTESPSVPSITPYFRNADWNEREFMEMYDIAVPGHPNPRRLFLDEKLDA 147
Query: 605 HPFRKDFPLS 634
PLS
Sbjct: 148 GIMNTIVPLS 157
>UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3;
Dehalococcoides|Rep: Hydrogenase, group 4, HycE subunit
- Dehalococcoides sp. (strain CBDB1)
Length = 526
Score = 37.1 bits (82), Expect = 0.38
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 470 TPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRIL--TDYGFEGHPFRKDF 625
+PV S +F +A ++EREI D YG F N D RR+ Y HP F
Sbjct: 92 SPVSSIAAIFPSACYFEREIRDGYGCEFENAFDRRRLFLHETYPANFHPLANSF 145
>UniRef50_Q9V0R7 Cluster: NADH dehydrogenase, 30 kD subunit; n=4;
Thermococcaceae|Rep: NADH dehydrogenase, 30 kD subunit -
Pyrococcus abyssi
Length = 175
Score = 37.1 bits (82), Expect = 0.38
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 446 VKTYTDELTPV-DSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGF-EG-HPFR 616
VKT + PV D+F + +ERE +M G+ F N PD RR+ F EG +P R
Sbjct: 91 VKTSVPKDNPVLPDISDIFPISLQFEREAMEMVGIDFENAPDKRRLFLPDDFPEGIYPLR 150
Query: 617 KD 622
D
Sbjct: 151 HD 152
>UniRef50_Q0E9R2 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=5; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum islandicum
Length = 177
Score = 37.1 bits (82), Expect = 0.38
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Frame = +2
Query: 251 LTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRY 430
+T L +++PP V V + LK+ F +++ ++ +D + +F + Y S
Sbjct: 34 VTPEGHLCLMVPPGKVREVATKLKE---LGFDHVLSLSAVDYMAEG-KFLVTYVYASYLN 89
Query: 431 ----NARIRVKTYTDELTP-VDSACDVFKAANWYEREIWDMYGVFFANHPDL-RRILTD- 589
N + V+ P + S D++ +A++ ERE +M+G++F +P + +R L D
Sbjct: 90 PDLKNQLLHVRAEIPRNDPKIASIADIYPSADYDERECHEMFGIWFEGNPHMGKRFLLDP 149
Query: 590 -------YGFEGHPFRKDF 625
G +P RKDF
Sbjct: 150 DCCIDEKTGKPLYPLRKDF 168
>UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2;
Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
subunit 5 - Desulfitobacterium hafniense (strain Y51)
Length = 554
Score = 36.3 bits (80), Expect = 0.66
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 503 AANWYEREIWDMYGVFFANHPDLRRILTDYGFEG--HPFRKDFP 628
A NW ERE+ D+ G+ HPD R ++ G+ G +P RK P
Sbjct: 110 ALNWPEREVRDLLGLHPDGHPDPRPLVLHPGWTGGFYPLRKPCP 153
>UniRef50_A4XJP5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Caldicellulosiruptor saccharolyticus DSM
8903|Rep: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit - Caldicellulosiruptor saccharolyticus (strain
ATCC 43494 / DSM 8903)
Length = 123
Score = 35.1 bits (77), Expect = 1.5
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 392 RFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFAN 559
RF+IIY+ +RV DE P S D++ AA + E EI D++G+ F N
Sbjct: 39 RFDIIYHFDKDYELKNLRVTIENDEKMP--SISDIYFAAVFVENEIKDLFGIDFEN 92
>UniRef50_A1ALK5 Cluster: NADH-quinone oxidoreductase; n=2;
Pelobacter propionicus DSM 2379|Rep: NADH-quinone
oxidoreductase - Pelobacter propionicus (strain DSM
2379)
Length = 159
Score = 35.1 bits (77), Expect = 1.5
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Frame = +2
Query: 227 PKYVQKVQLTAGNELEVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEII 406
P+ +++ + V +P + VL +++ F L I G+D F +I
Sbjct: 16 PELSGSIRIVRSRRIFVDVPDQRFLEVLDYVRGELG--FPILCLIVGLD---EGENFGVI 70
Query: 407 YNILSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRI-L 583
Y + S + + + S D + YERE+ DM+G+ PD R L
Sbjct: 71 YILASGDGTLASLTRRIPRDEPVICSIYDRMPNSEIYERELVDMFGIHVTGLPDGSRYPL 130
Query: 584 TDYGFEGH-PFRKDF 625
D EG P RKD+
Sbjct: 131 PDDWPEGQFPLRKDW 145
>UniRef50_Q6A6J0 Cluster: NADH-quinone oxidoreductase; n=1;
Propionibacterium acnes|Rep: NADH-quinone oxidoreductase
- Propionibacterium acnes
Length = 194
Score = 34.7 bits (76), Expect = 2.0
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 476 VDSACDVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLS 634
+DS V A+WY+REI D +GV F R L + P RK+ L+
Sbjct: 70 LDSIVGVLAGASWYQREIHDFFGVRFVGPGADDRALLVHDAPKPPLRKEAVLA 122
>UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus
capsulatus|Rep: Hydrogenase subunit - Methylococcus
capsulatus
Length = 527
Score = 34.7 bits (76), Expect = 2.0
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 497 FKAANWYEREIWDMYGVFFANHPDLRRILTD--YGFEGHPFRKDFPLSG 637
F A ER D+ G+ F HPD RR + +G P R DFPL+G
Sbjct: 100 FPGAARPERHTRDLLGLKFIGHPDDRRWVRHQAWGEREFPLRPDFPLAG 148
>UniRef50_Q7M450 Cluster: Cryptogene protein G1; n=2;
Trypanosomatidae|Rep: Cryptogene protein G1 - Leishmania
tarentolae (Sauroleishmania tarentolae)
Length = 196
Score = 34.7 bits (76), Expect = 2.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 515 YEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRY 655
+ERE++D++G F + L R D+ F G K +PL G + +
Sbjct: 126 FEREVFDLFGFVFCGNDCLHRFYVDWFFVGFFLCKVYPLFGLFMLNF 172
>UniRef50_A0TFH8 Cluster: Putative uncharacterized protein
precursor; n=2; Burkholderia cepacia complex|Rep:
Putative uncharacterized protein precursor -
Burkholderia ambifaria MC40-6
Length = 930
Score = 34.3 bits (75), Expect = 2.7
Identities = 23/73 (31%), Positives = 29/73 (39%)
Frame = +1
Query: 43 GAGNGVGRAILNSTKIPGVQRVATKSTEKTPXTRDTTYCSQIRSTPKGAARRLRQICS*L 222
G G G+G A+L + G RVA + + R T S + GA R R C L
Sbjct: 413 GRGGGIGVALLRGGGVGGCGRVALRGGQCFGLRRGVTLGSGLGFRRGGARERFRAACRLL 472
Query: 223 STQVCAESTADCR 261
V E D R
Sbjct: 473 RGVVIVEQLIDAR 485
>UniRef50_A3H7K7 Cluster: NADH-quinone oxidoreductase, B subunit;
n=4; Thermoproteaceae|Rep: NADH-quinone oxidoreductase,
B subunit - Caldivirga maquilingensis IC-167
Length = 374
Score = 34.3 bits (75), Expect = 2.7
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +2
Query: 290 DAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTYTD-- 463
DAV+ DH + N++D+ V R E + S + + + Y D
Sbjct: 252 DAVLSAFKLGFDH--VKSINVIDLINAGV----FRMEYVLGSYSSKELQPVLLAIYFDVP 305
Query: 464 -ELTPVDSACDVFKAANWYEREIWDMYGVFFANHP 565
+ V S D++ A++ ERE+ D++GV+F +P
Sbjct: 306 RDEAKVPSIIDIYPGADYQERELHDLFGVWFDGNP 340
>UniRef50_Q0MX76 Cluster: Glycosyl transferase; n=12; Bacteria|Rep:
Glycosyl transferase - consortium cosmid clone pGZ1
Length = 531
Score = 33.9 bits (74), Expect = 3.5
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 290 DAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVKTY---- 457
D VI ++F+K H + A LV G SNR I ++ L ++ + + +
Sbjct: 236 DTVIRAIAFMK-HSMGRRARLVIAGGPSTDPASNRTPEIDRLMRLAHDEDVAGEVHFMGR 294
Query: 458 --TDELTPVDSACDVFKAANWYE 520
D L+ SA DVF WYE
Sbjct: 295 CERDRLSLAYSAADVFVTTPWYE 317
>UniRef50_Q1DHJ8 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 829
Score = 33.5 bits (73), Expect = 4.7
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 146 TRPTVAKLDPLQKAQLVDFGKYVADCLPKYVQKV-QLTAGNELEVLIPPDAVIPVLSFLK 322
T P PL+ FG YV +QKV Q+ G+E + L+ D ++P+LS LK
Sbjct: 690 TTPNERGESPLEGLMKDQFGNYV-------IQKVLQVLKGDEYQTLV--DKIVPLLSHLK 740
Query: 323 DH-HSAQFANLVDIAGMDVPSRSN 391
H H Q A + P S+
Sbjct: 741 KHSHGKQIAAIEKHLAKPTPPTSS 764
>UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Thermofilum pendens Hrk 5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Thermofilum pendens (strain Hrk 5)
Length = 537
Score = 33.1 bits (72), Expect = 6.2
Identities = 26/104 (25%), Positives = 50/104 (48%)
Frame = +2
Query: 272 EVLIPPDAVIPVLSFLKDHHSAQFANLVDIAGMDVPSRSNRFEIIYNILSLRYNARIRVK 451
+V +PP+ + + L + +A+L I +D+ + E+IY+ + VK
Sbjct: 9 KVQVPPEGIREAVRRLV---AEGYAHLTAITAVDL---QDSIELIYHFDGGGGYRHVSVK 62
Query: 452 TYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANHPDLRRIL 583
T + S V A++YE+E+ D++GV F + + RR +
Sbjct: 63 LPRANPT-LPSIAQVVPGADYYEKEVRDLFGVNFQDGAEKRRFI 105
>UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, large subunit - Uncultured
methanogenic archaeon RC-I
Length = 486
Score = 32.7 bits (71), Expect = 8.2
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 365 GMDVPSRSNRFEIIYNILSLRYNARIRVKTYTDELTPV-DSACDVFKAANWYEREIWDMY 541
G+D R + + L ++T+ D PV S + A+W ERE+ +
Sbjct: 5 GVDKGVAGIRVDYYFGFDHLEPGCHTILRTFLDRENPVLKSVTTLTPQADWSEREMIEFL 64
Query: 542 GVFFANHPDLRRILTDYGFE 601
GV HPD R + +E
Sbjct: 65 GVRAEEHPDPRHLWLPLNWE 84
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,141,243
Number of Sequences: 1657284
Number of extensions: 13294741
Number of successful extensions: 31564
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 30549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31520
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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