Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G09
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.4  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   3.2  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   4.2  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    26   4.2  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   4.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   5.6  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.8  

>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 64  RAILNSTKIPGVQRVATKSTEKTPXTRDTTYCS 162
           RAIL+S + P  +  A+K+ E  P T D ++C+
Sbjct: 140 RAILDSIRYPFGKDHASKNMELLPITYDLSFCT 172


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = -1

Query: 570 KSGWLAKNTPYMSQISRSYQFAALNTSQAESTGVNSSV*VLTLIRAL*RRESMLYMISNL 391
           K GWL  N PY+  I     F   N     S G+       T         S LY +++ 
Sbjct: 470 KMGWLKPNQPYLLSIQDPVDFQ--NDVSKSSRGLLRV--KATFANGFDLLTSKLYALASR 525

Query: 390 FEREGTS 370
            EREG +
Sbjct: 526 IEREGVN 532


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 209 YVADCLPKYVQKVQLTAGNELEV 277
           Y+ADC+ K+V++V       LE+
Sbjct: 133 YIADCIKKFVEEVHPGKSQNLEI 155


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 157 CSQIRSTPKGAARRLRQICS*LSTQVCAESTADCRQRTRGAHSS 288
           CS +   P G   RL Q    L  +  AES++   +  + AH++
Sbjct: 99  CSYVHEIPLGVPLRLHQSKQALRAKAIAESSSTKLESRKSAHNA 142


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 255 VSCTFCTYLGRQSATYLPKSTSCAFWSGSNLATVGRV 145
           V+ +FCTY+GR     L  S +  +W    +A    V
Sbjct: 79  VAGSFCTYVGRYVDEALSFSLTWNYWLNDTIALASHV 115


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 596 FEGHPFRKDFPLSGYV 643
           FE  PF KD PL GY+
Sbjct: 477 FERWPFLKDLPLKGYL 492


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 413 ILSLRYNARIRVKTYTDELTPVD 481
           +++LR+N  ++ + YTD L  VD
Sbjct: 170 LIALRHNPSLKARIYTDVLNIVD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,210
Number of Sequences: 5004
Number of extensions: 55267
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)