Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G09
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0454 - 3234331-3236299,3237254-3238074                           31   1.1  
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178     28   5.8  
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627...    28   5.8  
06_01_0500 + 3584743-3585516                                           28   7.7  

>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = +2

Query: 200 FGKYVADCLPKYVQKVQLTAGNELEVLIP-PDAVIPVLSFLKDHHSAQFANLV-DIAGMD 373
           F K + DC  K   K +L +   L+     P A+I + SFL DH S    N V  I    
Sbjct: 340 FYKRIFDCEEKCPPKFELASEEILKRCDGIPLAIISISSFLADHESLYHWNEVKKIISSP 399

Query: 374 VPSRSNRFEIIYNILSLR-YNARIRVKTYTDELTPVDSACDVFKAA 508
           +P  +   E + ++L+L  YN    +++    L+     C++ K++
Sbjct: 400 LPG-NEYLETMQSVLALSYYNLPHDIRSCLLYLSAFPEDCEIAKSS 444


>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
          Length = 518

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 218 DCLPKYVQKVQLTA--GNELEVLIPPDAVIPVLSFL 319
           D LP  V  V+  A  G +  V+IP DAV+ ++SFL
Sbjct: 37  DGLPAAVAPVEAAAPVGEDPMVVIPDDAVLRIISFL 72


>03_05_0737 +
           27258320-27259007,27259263-27259435,27262684-27262758,
           27262832-27263296
          Length = 466

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 412 VIYDFESV*ARGYVHASDIDKVSKLSAV 329
           + YD+ +  A   +H SD+DKVS L+A+
Sbjct: 160 ITYDYVTEDAADLLHQSDLDKVSALAAL 187


>06_01_0500 + 3584743-3585516
          Length = 257

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 94  GVQRVATKSTEKTPXTRDTTYCSQIRSTPKGAARRLRQICS*LSTQVCAESTADCRQRTR 273
           G +R+  +  E +    D+T+CS+     +GAA     +    +T V A ++A C   T 
Sbjct: 171 GGERIGVRPMESSDD--DSTFCSRCARAQRGAASATALV----TTAVAAATSARCHSTTA 224

Query: 274 G 276
           G
Sbjct: 225 G 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,334
Number of Sequences: 37544
Number of extensions: 371896
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)