Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G09
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8449| Best HMM Match : PAPA-1 (HMM E-Value=7.4)                     41   8e-04
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)              28   5.9  
SB_10886| Best HMM Match : SH3_1 (HMM E-Value=2.8e-19)                 28   5.9  
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           28   7.9  

>SB_8449| Best HMM Match : PAPA-1 (HMM E-Value=7.4)
          Length = 181

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +2

Query: 116 NLRKKPPXQETRPTVAKLDPLQKAQLVDFGKYVADCLPKYVQKVQLTAGNELEVL--IPP 289
           N   +P  Q TRPT  +   +Q  Q  +  KY  D  PK  ++   T    L V     P
Sbjct: 70  NTDNRPNAQNTRPTTDRTHKIQDRQQTERAKYKTDNRPKAQRRTDATPLTTLRVTTSFSP 129

Query: 290 DAVIPVLSFLK--DHHSAQFANLVDIA 364
            A IP L   K  DH    F  L+++A
Sbjct: 130 QAAIPKLLGQKPTDHFRVHFRALIEMA 156


>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
          Length = 533

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 209 YVADC--LPKYVQKV-QLTAGNELEVLIPPDAVIPVLSFLKD 325
           ++A+C    K+ ++V Q   GNE+EVL+    ++P LS L D
Sbjct: 209 FIANCNSCVKFAERVCQAGPGNEVEVLLLKREIMPRLSHLAD 250


>SB_10886| Best HMM Match : SH3_1 (HMM E-Value=2.8e-19)
          Length = 152

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 509 NWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVXVRY 655
           NW E E+    G+F  N+ +LR I  +   +  P     P++G   V+Y
Sbjct: 20  NWIEGEVNGRIGIFPTNYVELRPIEDEDEPDDAPPSPYVPVNGEAGVKY 68


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 383 RSNRFEIIYNILSLRYNARIRVKTYTDELTPVDSACDVFK 502
           +    E+  NI S RYN  +RV T   +   V+  C  +K
Sbjct: 874 KEEEVELTDNIGSARYNRNVRVATNHHQARNVNDMCKAYK 913


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,640,291
Number of Sequences: 59808
Number of extensions: 433588
Number of successful extensions: 925
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)