Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G08
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0324 - 20946774-20946935,20947301-20947780                       82   5e-16
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           81   7e-16
01_06_0783 + 31975261-31975398,31975583-31975726                       80   2e-15
02_04_0361 - 22359278-22359439,22362291-22362728                       76   4e-14
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     73   2e-13
06_01_0124 - 958935-959967,959985-961222                               30   2.3  
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989     29   5.4  
07_03_1423 + 26466550-26467110                                         28   9.5  

>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = +1

Query: 118 IKXADMSEXXQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGS 288
           +  ADMS   Q  A  CA ++   L+KF+  + +A  +KKEFDK Y PTWHCIVG ++GS
Sbjct: 122 VMAADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGS 180

Query: 289 YVTHETRHFIYFYLGQVAILLFKS 360
           +VTH    F+YF + ++ ++LFK+
Sbjct: 181 FVTHARGCFLYFSMDKIIVMLFKT 204


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 36/58 (62%), Positives = 42/58 (72%)
 Frame = +1

Query: 109 KAVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 282
           K  +K ADM E  +Q+A D A  A EK  +EKDIA +IKKEFDK + PTWHCIVGRNF
Sbjct: 46  KIQLKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +1

Query: 109 KAVIKXADMSEXXQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIVGRNF 282
           KA+++  DM    Q  A+  A +AL++F++   + IAA IKKEFD  + P W C+VG +F
Sbjct: 5   KAMVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASF 64

Query: 283 GSYVTHETRHFIYFYLGQVAILLFK 357
           G Y TH    FIYF LG +  L+FK
Sbjct: 65  GCYFTHSKGSFIYFKLGALRFLVFK 89


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
 Frame = +1

Query: 76  KNKPKSKLCXRKAVIKXADMSEXXQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKYN 249
           K K + K+  R   ++ ADM    Q+ AV  A  A+        K +A  +KKEFD  Y 
Sbjct: 97  KGKEERKVSVR---VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYG 153

Query: 250 PTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 360
           P WHCIVG  FGSYVTH    F+YF + +V +LLF++
Sbjct: 154 PAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/68 (51%), Positives = 42/68 (61%)
 Frame = +1

Query: 85  PKSKLCXRKAVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHC 264
           P   L   K  IK A+M E  +Q+A D    A EK  +EKDI  +IK EFDK + PTWHC
Sbjct: 50  PPPPLAGHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHC 108

Query: 265 IVGRNFGS 288
           IVG NFG+
Sbjct: 109 IVGHNFGT 116


>06_01_0124 - 958935-959967,959985-961222
          Length = 756

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 218 NAAMSFSMLNFSSA*VAQSTASCCXXSLMSAXFMTALRXHSLDLGLFLL 72
           N A+SF +L  +S  VA +  S    S+    F+T L   + +L +FLL
Sbjct: 401 NYAVSFGLLRMTSTPVAVALFSSIDLSITFLLFLTILYEEAWELAVFLL 449


>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
          Length = 476

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 311 WRVSCVTYEPKLRPTMQCQVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQSTA 156
           WR   +     +R  + C VGL+F   +  ++A + +S L F  A +A +T+
Sbjct: 260 WRELLLRPSAMVRRIVTCVVGLHFFQQASGIDAIVLYSPLVFKKAGMASNTS 311


>07_03_1423 + 26466550-26467110
          Length = 186

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -2

Query: 284 PKLRPTMQCQVGLYFLSN--SFLMNAAMSFSMLNFSSA*VAQSTASCCXXSLMSAXFMTA 111
           P L  T     GLY      +  +NA ++FS+       V  STA     SLM A    A
Sbjct: 107 PSLEETAVRAQGLYLYDGKAASTLNAWLAFSV-------VFNSTARRGTLSLMGAVLNFA 159

Query: 110 LRXHSLDL-GLFLLR*MNN 57
           L  H LDL G F L  MN+
Sbjct: 160 LGSHRLDLVGWFYLGLMND 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,459
Number of Sequences: 37544
Number of extensions: 334075
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)