Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_G08
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light ch... 174 5e-44
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 83 2e-16
Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical ... 66 2e-11
AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical ... 66 2e-11
AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical ... 30 1.6
AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical ... 29 4.9
AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D prot... 29 4.9
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 8.5
>U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light chain
protein 1 protein.
Length = 89
Score = 174 bits (424), Expect = 5e-44
Identities = 78/86 (90%), Positives = 83/86 (96%)
Frame = +1
Query: 106 RKAVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFG 285
RKAVIK ADMS+ QQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGRNFG
Sbjct: 4 RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63
Query: 286 SYVTHETRHFIYFYLGQVAILLFKSG 363
SYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 64 SYVTHETKHFIYFYLGQVAILLFKSG 89
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 83.4 bits (197), Expect = 2e-16
Identities = 34/83 (40%), Positives = 55/83 (66%)
Frame = +1
Query: 112 AVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 291
A ++ + M +Q+A A +++ +++E DIA +K FD++Y P WHCI G++FGS+
Sbjct: 58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSF 117
Query: 292 VTHETRHFIYFYLGQVAILLFKS 360
VT E FIYF +G +A +LFK+
Sbjct: 118 VTFEPDSFIYFRIGTIAFMLFKT 140
>Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical
protein M18.2 protein.
Length = 90
Score = 79.4 bits (187), Expect = 3e-15
Identities = 33/85 (38%), Positives = 52/85 (61%)
Frame = +1
Query: 109 KAVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGS 288
K +K DM + + + +A +NI+KD+AAF+K+E DKK+ TWH I G+ FGS
Sbjct: 5 KIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGS 64
Query: 289 YVTHETRHFIYFYLGQVAILLFKSG 363
V++E HFI +V ++++K G
Sbjct: 65 RVSYEMGHFILLKCNKVNVMIYKCG 89
>AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical
protein Y10G11A.2b protein.
Length = 129
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/94 (30%), Positives = 56/94 (59%)
Frame = +1
Query: 76 KNKPKSKLCXRKAVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 255
+ P+ L +I+ ++ +++ AL+ IE +IA+F+K++FD KY
Sbjct: 38 REPPEKALRFENVIIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGH 97
Query: 256 WHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 357
W C+VGRNFGS++ + FI+F + +++++LF+
Sbjct: 98 WQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129
>AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical
protein Y10G11A.2a protein.
Length = 111
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/94 (30%), Positives = 56/94 (59%)
Frame = +1
Query: 76 KNKPKSKLCXRKAVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 255
+ P+ L +I+ ++ +++ AL+ IE +IA+F+K++FD KY
Sbjct: 20 REPPEKALRFENVIIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGH 79
Query: 256 WHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 357
W C+VGRNFGS++ + FI+F + +++++LF+
Sbjct: 80 WQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111
>AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical
protein Y10G11A.3 protein.
Length = 134
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 76 KNKPKSKLCXRKAVIKXADMSEXXQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 243
+ P+ L +I+ ++ +++ AL+ IE +IA+F+K++FD K
Sbjct: 37 REPPEKALRFENVIIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92
>AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical
protein Y38F1A.5 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 278 LRPTMQCQVGLYFLSN 231
L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257
>AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D
protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 278 LRPTMQCQVGLYFLSN 231
L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 426 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAKI 277
Y D + + KI +L LTA K + S V+V EV HI+ I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,804,364
Number of Sequences: 27780
Number of extensions: 306770
Number of successful extensions: 710
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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