Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G07
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     29   1.1  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   2.0  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    28   2.0  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   3.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   6.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   8.0  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -1

Query: 230 SNFSHWKFRLKLLLEEKQLSNVFLKEKPTDKDDSRAKSILVQXLSDKYIDIVKNSNTTKE 51
           S+FSH        L  KQL N F+K      D+S         + DK I  +   NT   
Sbjct: 574 SSFSHELTPFASQLA-KQLRNTFVKLMQETMDESTTVDDFDSLVDDKSIAAIGILNTLST 632

Query: 50  MLTSLE 33
           M+ SLE
Sbjct: 633 MILSLE 638


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 546 VISNSLKGKELEEFNRIHYGRIDQCALFISSDAAQKAAS 662
           V+ N+L  K LE+ NRI YG+     + +S     K+ +
Sbjct: 747 VLQNTLVAKNLEQANRIAYGKTRWRVVTLSGQLIDKSGT 785


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -1

Query: 212 KFRLKLLLEEKQLSNVFLKEKPTDKDDSRAKSILVQXLSDKYIDIVKNSNTTKE 51
           K +L  LLEEKQL N  LK+    + ++ AK+ L++   +    ++K  N  K+
Sbjct: 155 KHKLLGLLEEKQLLNNLLKQS-DPQSNANAKAELLKEREEASETLLKKYNPGKD 207


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 71  FLRCQYICRSXIVPKLILLVSHLYPS-VSLL 160
           FL C+ IC+S   P  ILL + LY   +SLL
Sbjct: 75  FLLCRCICKSNCSPYPILLFTRLYMCLISLL 105


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -1

Query: 272 MTTAGSLLPILTENSNFSHWKFRLKLLLEEKQLSNVFLKEKPTDKDDSRAKSILVQXLSD 93
           +T   S+   + E  + S    + K LL +K L + +LK + T K +S    +    L  
Sbjct: 71  LTQQDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRRTHKKESDENQLSSSDLEK 130

Query: 92  KYID 81
            Y D
Sbjct: 131 TYYD 134


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 206  RLKLLLEE--KQLSNVFLKEKPTDKDDSRAKSILVQXLSDKYIDIVKNSNTTKEMLTSLE 33
            RL++L +E  +Q+SN+ LKE    K D+ +K +L    ++ Y  +V  S    ++L  L 
Sbjct: 1163 RLEILDDEAYRQISNMELKESFGSKIDTISKHLLYLKHNELYPKVVVFSQWL-DVLDVLH 1221

Query: 32   ARFE 21
              FE
Sbjct: 1222 KSFE 1225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,746
Number of Sequences: 5004
Number of extensions: 61444
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)