Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_G07
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 69 4e-12
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792... 33 0.39
07_03_0849 + 21997758-21998423 30 2.1
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 30 2.8
06_03_0973 - 26454553-26454792,26454990-26455084,26455217-26455514 29 4.8
09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421... 29 6.4
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 28 8.5
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 8.5
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 69.3 bits (162), Expect = 4e-12
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Frame = +3
Query: 534 SLDEVISNSLKGKELEEFNRI----HYGRIDQCALFISSDAAQKAASNGFEIKAYDFPAR 701
SL ++ ++L + +E +R+ + GR + A+ + + A ++ F+++A+ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALE-AISLPEATSALAKAHNFDVQAFRFDAD 86
Query: 702 KEECRKPRIVRLGLIQHSIAISTDNPITQQRLXIFEKVQKIISAAAAXQVNILGLQ 869
KE R+PR++R+GLIQ+SIAI T + Q+ I EKV+ +I AA VNIL LQ
Sbjct: 87 KEYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQ 142
>08_01_0815 -
7914634-7914740,7915262-7915357,7922268-7922328,
7922365-7923621
Length = 506
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Frame = -1
Query: 263 AGSLLPILTENSNFSHWKFRLKLLLEEKQ---LSNVFLKEKPTDKD--------DSRAKS 117
A +L P + SN+ WK R L L Q +S E P + D +
Sbjct: 119 AAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSPEEEAKFEASDCLFRG 178
Query: 116 ILVQXLSDKYIDIVKNSNTTKEMLTSLEARF 24
L+ L+D +D+ + + K+M +LEA+F
Sbjct: 179 ALISVLADNIVDVYMHMPSGKDMWDALEAKF 209
>07_03_0849 + 21997758-21998423
Length = 221
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 318 RNPKYFYLLTAHAICYHVKMLCGRISRLFLISQIIFLFTR 437
R P+ + A +C + MLCGR+ L+S +LF R
Sbjct: 133 RTPRPAAGVAAVIVCLVMVMLCGRVGATALVSAAFYLFPR 172
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.9 bits (64), Expect = 2.8
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = -1
Query: 257 SLLPILTE---NSNFSHWKFRLKLLLEEKQL--SNVFLKEKPTDKDDSRAKSILVQXLSD 93
SLLP+ ++ +S H + L++LL KQL +++ LKE P+ +DD L+ +
Sbjct: 1544 SLLPLPSQQRCSSLHEHPQLILEVLLMMKQLQSASLILKEFPSLRDDK-----LIVTYAK 1598
Query: 92 KYIDIVKNSNTTKEMLTSLEARFERKTSA 6
K I I NS + LT +R ++K A
Sbjct: 1599 KAISINVNSTPREPRLTISGSRAKQKKVA 1627
>06_03_0973 - 26454553-26454792,26454990-26455084,26455217-26455514
Length = 210
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Frame = -1
Query: 227 NFSHWKFRLKLLLEEKQLSNVFLKEKPTDKDDSRAKSILVQ-------XLSDKYIDIVKN 69
NF W+ RLK LL ++ +S + P D + + Q LSD + V +
Sbjct: 19 NFVLWQMRLKNLLAQQGISKALQETMPEKMDSDKWNEMKAQAAATIRLSLSDSVMYQVMD 78
Query: 68 SNTTKEMLTSLEARFERKT 12
T KE+ L + + K+
Sbjct: 79 EKTPKEIWDKLASLYMSKS 97
>09_04_0142 +
15039745-15040538,15041094-15041218,15041842-15042137,
15042267-15042554,15042834-15043193
Length = 620
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 233 NSNFSHWKFRLKLLLEEKQLSNVFLKEKPTDKDDSRAKSILVQ 105
+ NF W+ ++K LL ++ +S EKP +D K + +Q
Sbjct: 351 SGNFGLWQTKVKDLLAQQGVSKALKGEKPAKMEDDDWKEMQLQ 393
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/79 (21%), Positives = 38/79 (48%)
Frame = -1
Query: 242 LTENSNFSHWKFRLKLLLEEKQLSNVFLKEKPTDKDDSRAKSILVQXLSDKYIDIVKNSN 63
+ E ++ + R L E++ + L++KP+ +R+ I V SD + + +
Sbjct: 408 MKEAMEYAEARLRAAKELMERKGDSFKLRKKPSHHRSTRSTEIKVPTESDTFDENLSVKK 467
Query: 62 TTKEMLTSLEARFERKTSA 6
+TKE + S ++ ++ A
Sbjct: 468 STKEEMNSEDSLLDKHQKA 486
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -1
Query: 158 KEKPTDKDDSRAKSILVQXLSDKYIDIVKNSNTTKEMLTSLEARF 24
+E + D + L+ L+D +D+ + + K+M +LEA+F
Sbjct: 20 EEAKFEASDCLFRGALISVLADNIVDVYMHMPSRKDMWDALEAKF 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,958
Number of Sequences: 37544
Number of extensions: 341119
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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