Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_G03
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.46 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   10.0 

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 222 NVRGSPLSSRRSTKNNRVRFLASSYSIDSISLQLVPMCFN 103
           N+  SPLSSR     N   F+ S Y  +++  Q V   FN
Sbjct: 265 NLYYSPLSSRSLYYVNTKPFMKSEYGANNVQYQGVQDIFN 304


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 113 IGTNCRDMESMEYELARN 166
           +G  C D+E   YE+ARN
Sbjct: 415 VGGACSDVEQNFYEVARN 432


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 350 DYVDINTFQKHLSGAGVSSNNDYIEEAKQYFAGKMIQYGE 469
           DY    + Q  L+G   ++++D      Q+FA K  ++ E
Sbjct: 280 DYFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYE 319


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 707 CQY*CWQXVDYGSVQSWCVRYL 642
           C   CW  + Y  + +W + YL
Sbjct: 105 CVLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 707 CQY*CWQXVDYGSVQSWCVRYL 642
           C   CW  + Y  + +W + YL
Sbjct: 158 CVLSCWTNIYYIIILAWALFYL 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,064
Number of Sequences: 438
Number of extensions: 5142
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)