Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F23
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    30   0.20 
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   1.8  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    26   3.2  

>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +3

Query: 84  DPVTKQNIPPKPESKLAPLAPYVS-----PREQTRARVLSTVG 197
           DPVTKQ+IP + +  L+  A Y+S      REQ+R   L  +G
Sbjct: 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALG 205


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 84  DPVTKQNIPPKPESKLAPLAPYVS-----PREQTRARVLSTVG 197
           DP TKQ+IP      L+  A Y+S      REQ+R   L ++G
Sbjct: 163 DPKTKQHIPYSERKSLSGTARYMSINTHLGREQSRRDDLESLG 205


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 117 PESKLAPLAPYVSPREQTRARVLSTVGQRERA 212
           PES +  +   VS   Q RA +L + G+R+ A
Sbjct: 198 PESVVMAMHQQVSAERQKRAEILESEGKRQAA 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,536
Number of Sequences: 5004
Number of extensions: 21682
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)