Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F23
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                29   2.4  
SB_8748| Best HMM Match : Astacin (HMM E-Value=0)                      28   3.2  
SB_55995| Best HMM Match : F5_F8_type_C (HMM E-Value=4.9e-15)          27   5.6  
SB_42630| Best HMM Match : Ets (HMM E-Value=0)                         27   5.6  
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_29976| Best HMM Match : PT (HMM E-Value=5.9)                        27   5.6  
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               27   9.9  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           27   9.9  
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)               27   9.9  

>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  SLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPP-KPESKLAPLAPYVSPREQTRARVLST 191
           S +P P T     + P   A    P+ +  +PP  P    APL P++ P     ++ ++T
Sbjct: 183 STIPTPPTPPAPPSPPIPTAPPTPPMPETPLPPGSPHIPPAPLHPHIPPAPPNPSKAIAT 242


>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 757

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 295 AACSGRPCAWASSTSMWSRGVPRGSASNARSRCPTVERTRARVCSRGDT*GARGAN 128
           A  SG P +   ++S  + G P   A  + +  PT         S G T G+ GAN
Sbjct: 543 AGTSGAPTSVPPASSAPASGAPPSGAPASGATTPTTGPISGAPASNGPTSGSTGAN 598


>SB_55995| Best HMM Match : F5_F8_type_C (HMM E-Value=4.9e-15)
          Length = 335

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 39  AFGRRTKPGTRASVLDPVTKQNIPPKPESK---LAPLAPYVSPREQTRA-RVLSTVGQRE 206
           A  RRT P TRA VL  + + N   K       LA +A  V  +  T A R L  VG RE
Sbjct: 97  ALTRRTTPATRALVLVGIRELNAKIKSNRATPVLARMAELVLTKRTTPATRALVLVGIRE 156


>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
          Length = 631

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 96  KQNIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERAFEADPLGTPRDHMD 254
           +  +PP P    +PL    SP E      LS   +R  + E   + T   HM+
Sbjct: 71  RTGLPPVPPLVSSPLPSPTSPGELPYLPTLSPTSRRSSSSEVSVVVTTSSHME 123


>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 977

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 96  KQNIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERAFEADPLGTPRDHMD 254
           +  +PP P    +PL    SP E      LS   +R  + E   + T   HM+
Sbjct: 417 RTGLPPVPPLVSSPLPSPTSPGELPYLPTLSPTSRRSSSSEVSVVVTTSSHME 469


>SB_29976| Best HMM Match : PT (HMM E-Value=5.9)
          Length = 342

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +3

Query: 33  VTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERA 212
           VTAF R  +   +   +      NIPP    K A L    SP    RA +++T       
Sbjct: 168 VTAFPRWAREMIQYQAIISSAAANIPPSIAPKTALLVNTASPHTAHRAFIVTTCASTSTE 227

Query: 213 FEADPL 230
             A P+
Sbjct: 228 SPAVPV 233


>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 48  RRTKPGTRASVLDPVTKQNIPPKPESKLAPLAP-YVSPREQTRARVLSTVGQRERAFEAD 224
           ++ KP    S   PV+ + +P     K AP +P    P  + +A+ L+ V     A +AD
Sbjct: 768 KKPKPAPPPSPKKPVSSKKVPTAAAKKAAPASPAKAKPTPKPKAK-LTVVQGDIAAIDAD 826

Query: 225 PLGTP 239
            +  P
Sbjct: 827 AVVLP 831


>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 274 CAWASSTSMWSRGVPRGSASNARSRCPTVERTRARVCSR 158
           CAW S T +  R      + N   R     R  AR C+R
Sbjct: 512 CAWQSGTDLTERRKRHFVSCNTLGRRSLASRRDARACAR 550


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 24  PDPVTAFGRRTKPG-TRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARVLSTVGQ 200
           P P +A  R T+P  +R  V  P   +  P KP  +L+P      P    R++  S  GQ
Sbjct: 403 PSPTSAV-RTTEPEESRIDVFVPAMFREKPKKPSHRLSP------PARAVRSQASSASGQ 455

Query: 201 RERA--FEADPLGTP 239
                 +E   L TP
Sbjct: 456 ARMTVEYETPTLRTP 470


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 35  DSLRAAHQAGHARLRVGPRHQTKHPAETG 121
           DS RA    G  +   GP  Q  HP  TG
Sbjct: 199 DSARATTGPGQGQKPQGPNQQQNHPLSTG 227


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +3

Query: 78   VLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARV 182
            VLD   K   PPKP S   P AP  +    T   V
Sbjct: 1461 VLDMYFKGKSPPKPASSSTPTAPKTTTNPATPTAV 1495


>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
          Length = 267

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -3

Query: 286 SGRPCAWASSTSMWSRGVPRGSASNARSRCPTVERTRARVCSRGDT*GARGANFDSGFGG 107
           S +P       + W +G       + R R   V++TRA V  RG   G  G  F  G GG
Sbjct: 42  SPKPDLATGLPTSWPQGDAATGRGSTRDR-RRVKKTRASVGGRGGGFGG-GGGFGGGGGG 99

Query: 106 MF 101
            F
Sbjct: 100 GF 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,650
Number of Sequences: 59808
Number of extensions: 211740
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)