Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F23
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical ...    30   0.93 
L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease pr...    29   2.1  
AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered cut...    29   2.1  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z31590-3|CAD27605.1|  607|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.       27   5.0  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 60  PGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARV--LSTVGQRERAFEADPL 230
           P T AS L+P       P PE +  P  P   P+ +T   V    T G+++   EA PL
Sbjct: 628 PVTEASPLNPQPPPPPSPSPEPEPEPKPPVTPPKNETVDPVHENGTSGEKDGTPEAQPL 686


>AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical
           protein C34B2.6 protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 45  GRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARVL--STVGQRER 209
           GRR +    AS   P+T    PP     +A +AP +S  E+   +    S  G++++
Sbjct: 199 GRRARGKRAASATSPLTPPPSPPPLAPSVASVAPEISATEEKEEKTTPPSATGEKQK 255


>L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease
           protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 244 SRGVPRGSASNARSRCP--TVERTRARVCSRGDT*GARGANFDSGFGGMFCLV 92
           S+G  +GS    R  CP  + +  +   CS+ D      +N  SGFG MF +V
Sbjct: 456 SKGYGKGSIGYCRPCCPEGSTKSWQCEDCSKPDPTLLIDSNKSSGFGLMFWIV 508


>AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformd protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 244 SRGVPRGSASNARSRCP--TVERTRARVCSRGDT*GARGANFDSGFGGMFCLV 92
           S+G  +GS    R  CP  + +  +   CS+ D      +N  SGFG MF +V
Sbjct: 828 SKGYGKGSIGYCRPCCPEGSTKSWQCEDCSKPDPTLLIDSNKSSGFGLMFWIV 880


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +3

Query: 87  PVTKQNIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERAFEADPLGTPRDHMDVLLA 266
           PV +Q  PP+     AP+A    P +  +A+    V Q     +A P    +      + 
Sbjct: 185 PVVQQTPPPQQPVVQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPVQQQPVV 244

Query: 267 QAHGRPL 287
           QA  +P+
Sbjct: 245 QAPPKPI 251


>Z31590-3|CAD27605.1|  607|Caenorhabditis elegans Hypothetical
           protein R01H10.3c protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 18  LVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRAR------ 179
           +V D +     R  P +R +     ++  IPPK ESK+ P+ P  + + ++RA       
Sbjct: 449 VVDDDMGIVTMREAPPSRPAS-SRASRTEIPPKEESKVDPMKPKQAVQLKSRAARDEPGG 507

Query: 180 VLSTVGQRERAFEAD 224
              T GQR  A E +
Sbjct: 508 GAQTAGQRRAAAELE 522


>Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical
           protein R01H10.3a protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 18  LVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRAR------ 179
           +V D +     R  P +R +     ++  IPPK ESK+ P+ P  + + ++RA       
Sbjct: 449 VVDDDMGIVTMREAPPSRPAS-SRASRTEIPPKEESKVDPMKPKQAVQLKSRAARDEPGG 507

Query: 180 VLSTVGQRERAFEAD 224
              T GQR  A E +
Sbjct: 508 GAQTAGQRRAAAELE 522


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 57  KP-GTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQ 167
           KP GT+     P  +   PP+P+  ++P+ P   P +Q
Sbjct: 217 KPSGTKMPAQPPPQQHPPPPQPQQIMSPMPPQAPPSQQ 254


>U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 271 AWASSTSMWSRGVPRGSASNARSRCPTVERTRARVCSRGDT*GARGAN 128
           A+      W R +   +  N RSR   +    ARVC + D  GAR AN
Sbjct: 230 AYKEHVYFWFREIASEAIDNNRSRSFQIYARVARVC-KNDKGGARPAN 276


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
 Frame = +3

Query: 24  PDPVTAFGRRTKPGTRAS--VLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARVLSTVG 197
           P    +FG    P T  S   L P    +   +  +  +  +P   P   + +R ++ V 
Sbjct: 35  PSSSDSFGPSAAPSTSLSPPFLSPSYSMDYIIEAMTSSSSTSPVPPP--VSASRPVAPVV 92

Query: 198 QRERAFEADPLGTPRDHMDVLLAQAHGRPLHAAHRH 305
            R     A P+G  R H      Q   + LHA H H
Sbjct: 93  ARVEGLRAVPVGHRRQHSSPGHLQQFQQELHARHHH 128


>Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical
           protein T22C8.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 232 PRGSASNARSRCPTVERTRARVCSRGDT*GARGANFDSG 116
           P+ +++    RC    R  A+   +GD  GA   +FDSG
Sbjct: 121 PKKTSARNAGRCAAYFRDCAQFIEKGDPLGAIANSFDSG 159


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 44  RAAHQAGHARLRVGPRHQTKHPAETGVEVGAS 139
           R+ HQ  HAR      H+++  A     VGAS
Sbjct: 366 RSEHQTEHARTGSSSHHESRSRAAAAAPVGAS 397


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 43  SGGAPSRARAPPCWTPSPNK 102
           SGG  SR+ +PP  +PSP K
Sbjct: 248 SGGRRSRSNSPPNRSPSPKK 267


>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 123 SKLAPLAPYVSPREQTRARVLSTVGQRERAFEADPLGTPRDHMDVLLAQAHGRPLHAAHR 302
           S  +P+ P VS      +R ++ V  R     A P+G  R H      Q   + LHA H 
Sbjct: 12  SSTSPVPPPVSA-----SRPVAPVVARVEGLRAVPVGHRRQHSSPGHLQQFQQELHARHH 66

Query: 303 H 305
           H
Sbjct: 67  H 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,098,796
Number of Sequences: 27780
Number of extensions: 148090
Number of successful extensions: 597
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)