Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F21
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    47   2e-06
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    37   0.002
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    36   0.007
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    33   0.046
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   2.3  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   9.3  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 19/31 (61%), Positives = 21/31 (67%)
 Frame = +3

Query: 171 DRRIKNGVLEYYLKWKGYSDEXNTWXPEDNL 263
           DR  KNG+ EYY+KW GY    NTW PE NL
Sbjct: 30  DRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 165 VLDRRIKN--GVLEYYLKWKGYSD-EXNTW-XPEDNLDCPDLI 281
           +LD R+K      +YYLKW+GY D   NTW   ED   C +LI
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 183 KNGVLEYYLKWKGYSD-EXNTWXPE-DNLDCPDLIQ 284
           K G  EY LKW+GY D   NTW  E D   C  LI+
Sbjct: 94  KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIE 129



 Score = 32.3 bits (70), Expect = 0.061
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 483 GELMFLMKWQGTDEPHLVPAXQANVRCPQVVIQFYEERLTW 605
           G L   + W+     H  P+   N +CPQ ++QFYE  LT+
Sbjct: 285 GTLEIYLTWKNGAISHH-PSTITNKKCPQKMLQFYESHLTF 324


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 165 VLDRRI-KNGVLEYY-LKWKGYSDEXNTWXPEDNL 263
           ++D ++ +NG ++ Y ++W  YS   +TW P +NL
Sbjct: 13  IVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 112 TRKKKTNQKPKRNFLLKKFWTGALRMVFW 198
           T+ K   +KP +NF+ +  WT  L  +F+
Sbjct: 39  TKHKSLARKPSQNFITRTIWTFLLLGIFF 67


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 340 IRIQRSVNQ-PQPHLISKVQRKPKV 411
           I+ +RS+++ PQ  ++ KV +KPKV
Sbjct: 111 IKQKRSLSESPQESMLEKVSKKPKV 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,367
Number of Sequences: 5004
Number of extensions: 36311
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)