Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F21
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)        103   9e-23
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                50   1e-06
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 48   5e-06
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)                40   0.002
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   31   0.60 
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   29   3.2  

>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score =  103 bits (248), Expect = 9e-23
 Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
 Frame = +3

Query: 165 VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLIQXXXXXXXXXXXXGXXXXXXX 344
           V+D+R+ NG +EY LKWKGY D  NTW  E+ L CP+LI+                    
Sbjct: 33  VMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEYEKKKKASSKRKDSTSEKG 92

Query: 345 XXXXXXXXXXXPDLXXXXXXXXXXXXXXXFD---RGLXPEKIIGATDSSGELMFLMKWQG 515
                       +                 D    G   + I+GAT+  G++ FL++W+ 
Sbjct: 93  ESKPKKRKVNAYEELGMKAVEVEDASKDDVDPIAEGWEADTILGATEVDGQIHFLIQWKS 152

Query: 516 TDEPHLVPAXQANVRCPQVVIQFYEERLTW 605
           TD   L+P+  AN++ PQ+VI+FYEER+TW
Sbjct: 153 TDRADLIPSKVANLKWPQIVIKFYEERVTW 182



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +3

Query: 453 EKIIGATDSSGELMFLMKWQGTDEPHLVPAXQANVRCPQVVIQFYEER 596
           EK++     +G + +L+KW+G  +       +  ++CP+ +I+ YE++
Sbjct: 31  EKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPE-LIEEYEKK 77


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = +3

Query: 165 VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLIQ 284
           +L  R+++G + Y++KWKGYS   NTW PE+N+  P L++
Sbjct: 30  ILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLLK 69


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 165  VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNL-DCPDLI 281
            +LDRR++ G +EY ++WKGY    +TW P  NL  C +LI
Sbjct: 910  ILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELI 949


>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
          Length = 517

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 13/35 (37%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
 Frame = +3

Query: 183 KNGVLEYYLKWKGYSDEXNTWXPEDNL-DCPDLIQ 284
           ++GV  + ++WKGY+ + +TW PE+N+ +C D+++
Sbjct: 13  QDGVRYFKVRWKGYTPDDDTWEPEENVFECEDVLE 47


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 183  KNGVLEYYLKWKGYSDEXNTWXP 251
            + G  EY++ WKG+ D+ N+W P
Sbjct: 1238 RGGRGEYWVHWKGWPDKYNSWVP 1260


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 165 VLDRRI-KNGVLEYYLKWKGYSDEXNTWXPEDNL 263
           ++ RRI ++G  EY + WK Y    +TW P +NL
Sbjct: 27  IIGRRITQSGKEEYLVHWKKYKVWESTWEPLENL 60


>SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 189 GVLEYYLKWKGYSDEXNTWXP 251
           G  +Y++ WKG+ ++ N+W P
Sbjct: 100 GARKYWVHWKGWPNKYNSWVP 120


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 165  VLDRRIKNGVLEYYLKWKGYSDEXNTWXP 251
            V+  R + G   Y++ WKG+ D+  +W P
Sbjct: 1081 VVKTRKRGGRKVYWVHWKGWPDKYKSWVP 1109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,040
Number of Sequences: 59808
Number of extensions: 271727
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)