Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F21
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 58 4e-09
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 58 4e-09
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 51 8e-07
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 51 8e-07
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 46 2e-05
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 39 0.003
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 32 0.30
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical ... 30 1.6
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical ... 29 3.7
U13072-3|AAK31396.4| 326|Caenorhabditis elegans Serpentine rece... 28 4.9
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical... 27 8.6
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 58.4 bits (135), Expect = 4e-09
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 1/155 (0%)
Frame = +3
Query: 165 VLDRRI-KNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLIQXXXXXXXXXXXXGXXXXXX 341
VLD+R K G E+ ++W+G+ + ++W P +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKPIRKRHSQ 83
Query: 342 XXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFDRGLXPEKIIGATDSSGELMFLMKWQGTD 521
D G + I+G T GEL FL K+ D
Sbjct: 84 KPEPSEDQADPEEDKDEKKETNQNDKFSL---EGKQLKCIVGLTKGPGELHFLCKFSD-D 139
Query: 522 EPHLVPAXQANVRCPQVVIQFYEERLTWHTPALDE 626
L+PA + N R P VI++YE +LT P DE
Sbjct: 140 TARLLPAKEVNSRYPSQVIRYYESKLTIQDPKADE 174
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 58.4 bits (135), Expect = 4e-09
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 1/155 (0%)
Frame = +3
Query: 165 VLDRRI-KNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLIQXXXXXXXXXXXXGXXXXXX 341
VLD+R K G E+ ++W+G+ + ++W P +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKPIRKRHSQ 83
Query: 342 XXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFDRGLXPEKIIGATDSSGELMFLMKWQGTD 521
D G + I+G T GEL FL K+ D
Sbjct: 84 KPEPSEDQADPEEDKDEKKETNQNDKFSL---EGKQLKCIVGLTKGPGELHFLCKFSD-D 139
Query: 522 EPHLVPAXQANVRCPQVVIQFYEERLTWHTPALDE 626
L+PA + N R P VI++YE +LT P DE
Sbjct: 140 TARLLPAKEVNSRYPSQVIRYYESKLTIQDPKADE 174
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 459 IIGATDSSGELMFLMKWQGTDEPHLVPAXQANVRCPQVVIQFYEERL 599
IIG T + GEL FL K+ D HL+P +ANVR P VI+FYE RL
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 165 VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLIQ 284
VL++R+ G EYY+KW+G+ + +W P +NL C +IQ
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQ 81
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 459 IIGATDSSGELMFLMKWQGTDEPHLVPAXQANVRCPQVVIQFYEERL 599
IIG T + GEL FL K+ D HL+P +ANVR P VI+FYE RL
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 165 VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLIQ 284
VL++R+ G EYY+KW+G+ + +W P +NL C +IQ
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQ 81
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 165 VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLIQ 284
+L+ R K G E+Y+KW GY N+W P++N+ P LI+
Sbjct: 13 ILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIE 52
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 165 VLDRRI-KNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLI 281
VLD+R K G E+ ++W+G+ + ++W P +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 165 VLDRRI-KNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLI 281
VLD+R K G E+ ++W+G+ + ++W P +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 165 VLDRRI-KNGVLEYYLKWKGYSDEXNTWXPEDNLDCPDLI 281
VLD+R K G E+ ++W+G+ + ++W P +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 171 DRRIKNGVLEYYLKWKGYSDEXNTWXPEDNLD-CPDL 278
D+R ++ Y + W+GY + TW PE+NL+ C +L
Sbjct: 42 DKR-RHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 32.3 bits (70), Expect = 0.30
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 165 VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNL 263
+L ++ + +L ++W GY + +TW PE++L
Sbjct: 29 ILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDL 61
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 201 YYLKWKGYSDEXNTWXPEDNLDCPDLI 281
+ +KW GY ++ TW PE N+ PD +
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI--PDSV 119
>AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical
protein K10B4.4 protein.
Length = 403
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 620 ECWCVPCEPFFIKLNNYLWAPHISLXCWYKMWFICSLP 507
E W C P K+ + LW ++ + + + F+C+LP
Sbjct: 130 ERWLAICHPLRSKIFSTLWRANVLIILAWTISFVCALP 167
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 198 EYYLKWKGYSDEXNTWXPEDNL 263
++++KW G+S NTW E++L
Sbjct: 238 QFFVKWTGWSHLHNTWESENSL 259
>AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical
protein Y39C12A.7 protein.
Length = 324
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 281 YKIWTIKIILWXPCIXFITVSFPFQVIFQNTILNAPVQNFFNRK 150
+ I+ I II C F T +PF V+F + I++ + N N K
Sbjct: 123 FLIYLISIISVLVCTQFSTTFYPFLVLFMSNIISY-IVNIINYK 165
>U13072-3|AAK31396.4| 326|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 3 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 141 RLLVRFLFSCRPLSYKA*AIIKFTLTKHIHRHNNIAQIAETGVI 10
++L F F+C LSY + + L +H HNN+ + + V+
Sbjct: 22 QVLTYFEFACICLSYPMVIFLGYQLFQHRVFHNNLQNLVKAAVV 65
>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
protein F25G6.2 protein.
Length = 1143
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 165 LFQQKIPLRLLVRFLFSCRPLSYKA*AIIKFTLTKHIHRHN 43
L QK+ +RL RF C P K +I+F L H R++
Sbjct: 572 LMYQKLVVRLTTRFWEDCTPFEEK---LIEFVLADHKKRND 609
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,324,961
Number of Sequences: 27780
Number of extensions: 207119
Number of successful extensions: 521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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