Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F21
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    37   2e-04
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 165 VLDRRIKNGVLEYYLKWKGYSDEXNTWXPEDNL-DCPDLIQ 284
           +L ++   GV  Y +KWK +  + NTW P  NL +C D+++
Sbjct: 249 ILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILE 289


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 574 TTCGHRTLACXAG-TRCGSSVPCHFMRNMSSPLLS 473
           TTC   T+ C  G  R      C  ++ +  P+LS
Sbjct: 290 TTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLS 324


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 608 VPCEPFFIKLNNYLWAPHI 552
           V C+  +  +NN+LW P I
Sbjct: 60  VVCDVAYNNVNNWLWTPFI 78


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 530 MWFICSLPFHEEHEFTTTIRSANYF 456
           ++FIC  PFH +       + ++Y+
Sbjct: 278 LFFICWAPFHTQRLLYVYAQESDYY 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,797
Number of Sequences: 438
Number of extensions: 2544
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)