Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F18
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 87 2e-17
12_02_0892 + 24071417-24072241,24072264-24072908 28 5.6
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 28 5.6
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417... 28 5.6
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 7.4
09_06_0337 - 22396350-22396994 27 9.7
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 27 9.7
03_01_0275 + 2121758-2122693 27 9.7
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 86.6 bits (205), Expect = 2e-17
Identities = 44/98 (44%), Positives = 56/98 (57%)
Frame = +2
Query: 290 DQLMELAGLSVASAIAKVFPPSTVDIPSGWDVEKGPGEGRALKPALLISLSAPKLCAKPE 469
D + L LS AK +VDIPSGW VE+G G KP +L+SL+APKLCAK
Sbjct: 157 DLINRLVSLSAIDNSAKRPAIVSVDIPSGWHVEEGDINGGGFKPDMLVSLTAPKLCAKK- 215
Query: 470 FLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIVKL 583
H+LGGRF+P I+ KY L +P YP V++
Sbjct: 216 -FTGPHHFLGGRFVPPPIVSKYKLHLPPYPGTSMCVRI 252
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/54 (48%), Positives = 37/54 (68%)
Frame = +2
Query: 185 MTSSVNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVF 346
+++S + +L Q EAA +D+ L FSVDQLMELAGLSVA+A+A+V+
Sbjct: 6 VSASASASGEEVTHLAQREAAEIDEQLMGPLGFSVDQLMELAGLSVAAAVAEVY 59
>12_02_0892 + 24071417-24072241,24072264-24072908
Length = 489
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 584 IILQFVPDQDIVEFLNYISSIYQLA 510
+IL F+ Q+IVEFLN++ + LA
Sbjct: 331 VILSFMSFQEIVEFLNFLYGLGMLA 355
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 88 DRYFGSKCQFYLIKSYVRVTYVL 20
DRYFGS C+ LI ++ + Y+L
Sbjct: 203 DRYFGSVCELDLIFNFHKAYYIL 225
>03_01_0563 +
4169144-4169516,4170362-4170648,4171339-4171576,
4172473-4172796,4172914-4172999,4173124-4173231,
4173315-4173619,4173733-4173960,4174109-4174877
Length = 905
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +2
Query: 299 MELAGLSVASAIAKVFPPSTVDIPSGWDVEKG----PGE--GRALKPALLISLSAPKLCA 460
MEL GL+ A+A A V PP+ GW + PGE GR IS P+L A
Sbjct: 1 MELTGLTRAAAAATVTPPAP---RRGWGELRFAPLLPGERHGRRKVVVAAISEEVPRLAA 57
Query: 461 KP 466
P
Sbjct: 58 SP 59
>04_04_1154 - 31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = +2
Query: 149 ILRVAKLYNIGTMTSSVNQCNTVTRYLNQSEAA--ALDQDLFTEYKFSVDQLMELAGLSV 322
++RVA L G+ V+ ++ A TE++ V V
Sbjct: 829 VIRVALLCTQGSPHKRPPMSKVVSMLTGDADITEDAAKPSYITEWQIKVGSCHHTGSSQV 888
Query: 323 ASAIAKVFPPSTVDIPSGWDVEKGPGEGRALKPALLIS 436
SA PPS+ D +G +G GEG L P+ L +
Sbjct: 889 GSAST---PPSSGDGGAGQASSQGAGEGSPLTPSPLFT 923
>09_06_0337 - 22396350-22396994
Length = 214
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 242 AAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTVDIP 370
++A + + FT K ++ + L G SV+ A VFPPSTV+ P
Sbjct: 62 SSAPEPNSFTVTKATMAEFPALNGQSVSYATL-VFPPSTVNPP 103
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 352 GWE-DLGNGTSNTQASKFHKLIDTKLVFSE 266
GWE D G+ NT AS+F + ID FSE
Sbjct: 344 GWEVDQGSYFPNTFASRFDEGIDASFDFSE 373
>03_01_0275 + 2121758-2122693
Length = 311
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 411 ALPSPGPFSTSQPLGISTVEGGKTLAMALATLRPA 307
A SPGP ++S+P ++ GK L TL P+
Sbjct: 60 AAASPGPAASSRPARDRVIDFGKHKGQMLGTLPPS 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,796,282
Number of Sequences: 37544
Number of extensions: 318442
Number of successful extensions: 767
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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