Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F18
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034393-3|CAA22319.1| 348|Caenorhabditis elegans Hypothetical ... 73 1e-13
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 29 3.8
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 29 3.8
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 29 3.8
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 29 3.8
AF016654-3|AAB66030.1| 348|Caenorhabditis elegans Hypothetical ... 28 6.6
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 27 8.7
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z67883-1|CAA91805.1| 415|Caenorhabditis elegans Hypothetical pr... 27 8.7
>AL034393-3|CAA22319.1| 348|Caenorhabditis elegans Hypothetical
protein Y18D10A.3 protein.
Length = 348
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Frame = +2
Query: 356 TVDIPSGWDVEKGPGEGR---ALKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDIL 526
++D+PSGWDVE G G + P +ISL+ PKLC K H+LGGRF+P ++
Sbjct: 271 SIDVPSGWDVELGAPSGNDDDVIHPHSVISLTLPKLCMKNW---TGPHFLGGRFVPKSLV 327
Query: 527 KKYNLEIPQYPDQEQIVKL 583
++ L +PQYP EQIVKL
Sbjct: 328 DEHELLMPQYPGFEQIVKL 346
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 224 YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTVDIPSGWDVEKGPG 400
++ Q AA +D+ LFT+Y F V+QLMELAGL+ A AIA +P S V + G G G
Sbjct: 125 FIGQKLAAQIDEQLFTKYGFKVEQLMELAGLAAAQAIAAHYPKSNVAVLCGPGNNGGDG 183
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 470 FLRNTKHYLGGRFLPTDILKKYNLEIPQYP 559
F RNTKH R TD+L+++ + P P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 470 FLRNTKHYLGGRFLPTDILKKYNLEIPQYP 559
F RNTKH R TD+L+++ + P P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 470 FLRNTKHYLGGRFLPTDILKKYNLEIPQYP 559
F RNTKH R TD+L+++ + P P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 470 FLRNTKHYLGGRFLPTDILKKYNLEIPQYP 559
F RNTKH R TD+L+++ + P P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696
>AF016654-3|AAB66030.1| 348|Caenorhabditis elegans Hypothetical
protein C17A2.4 protein.
Length = 348
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 458 AKPEFLRNTKHYLGGRFLPTDILKKYNLEIPQYPDQEQIVK 580
A P+F+RN+ Y+ F+P KK + ++ + D + ++
Sbjct: 186 ADPDFIRNSVKYIAENFIPEIEYKKVHRKVVIFGDDLEFMR 226
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 426 SAGFNALPSPGPFSTSQPLGISTVEGGKTLAMALATLRP 310
++G + SPG STSQP+ +TV+ ++ L P
Sbjct: 1032 TSGTGSTASPGTGSTSQPVTATTVQATTKSTTSVTVLTP 1070
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical protein
F23B2.12 protein.
Length = 1080
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 426 SAGFNALPSPGPFSTSQPLGISTVEGGKTLAMALATLRP 310
++G + SPG STSQP+ +TV+ ++ L P
Sbjct: 1032 TSGTGSTASPGTGSTSQPVTATTVQATTKSTTSVTVLTP 1070
>Z67883-1|CAA91805.1| 415|Caenorhabditis elegans Hypothetical
protein K02A4.1 protein.
Length = 415
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 569 VPDQDIVEFLNYISSIYQLAEIFLPNNVWCSL 474
+PD D E +N ++ + +L + ++PN+ CSL
Sbjct: 152 LPDFDSEEMINVLTELLRLDQEWVPNSDVCSL 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,173
Number of Sequences: 27780
Number of extensions: 295028
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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