Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F17
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   0.89 
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    28   1.6  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.3  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.3  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 206 RTTLTCNNLEH--LQRVVSSWKSKNFMT*LINWAWKKLK 316
           +  L CN LE+     V SS++ +NF+   I+ AWK L+
Sbjct: 667 KKALECNKLENRVYDLVRSSYEQRNFLIKKISHAWKALQ 705


>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 192 FIPGRLLRAWHRCKLRYSRNCQR 124
           F+P  LL+A+H+C+ R +R  ++
Sbjct: 63  FVPQPLLKAFHKCQARLTRELEK 85


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 181 SWN--EGLTKQDYTYMQQLGTLTASGLIMEVKK--LHDLAYQLGLEEA 312
           SWN  + L + +Y +  + GTLT +  +ME KK  ++ +AY     EA
Sbjct: 553 SWNISDDLGQVEYIFSDKTGTLTQN--VMEFKKCTINGVAYGEAFTEA 598


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 379  FKRSKCSPSIKMFFFCF*NLQILLKLCIIL 468
            F R  CS S KM F CF +    L+LC +L
Sbjct: 1005 FYRQACSISEKMPFSCF-SATFQLRLCSLL 1033


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = +1

Query: 13  ERNMFRLETNSFEH*TYTME--KNNVNLTSEEESQCSNDSLTVPGVSEFA-----PMPGT 171
           +RN  R    S    TY  E  + N+N  +     C+N + +V  + E+       MP T
Sbjct: 119 KRNQSRKNQMSNNSTTYHRETKRRNINAEASTSDNCNNSNTSVDPMDEYLVTAEYTMPST 178

Query: 172 QEPS 183
            E S
Sbjct: 179 SEQS 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,078
Number of Sequences: 5004
Number of extensions: 56375
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)