Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F17
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)           31   1.2  
SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_27542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)                     29   5.0  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_10278| Best HMM Match : WH2 (HMM E-Value=6.6)                       28   8.8  

>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +2

Query: 56  KLIQWRRITLISLLKKNLSVPTIL*QFRE----YRSLHRCQARRSLPGMKVSQNRTTLTC 223
           K I WR    I L +K LSVP ++    E     + L RC  R S+ G K    RT++T 
Sbjct: 758 KSIGWRAHQEIVLRQKRLSVPKLVVSHEENGPLLQELVRCNVRGSMEGDK---PRTSVTL 814

Query: 224 NNLEHLQRVVSSWK--SKNFMT 283
              + L  +++++   S++ MT
Sbjct: 815 YAFQSLPEILNAFSHPSEDLMT 836


>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
          Length = 720

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 208 DYTYMQQLGTLTASGLIMEVKKLHDLAYQLG 300
           D ++M QL ++ A  +  +++KLH+++YQ G
Sbjct: 597 DDSFMNQLISIWAPKIFQDIEKLHEISYQYG 627


>SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 457 CIILPFSLKFLTSNNCSGHESNSYQSTLSIVVTSNIIY 570
           C +L  S K   + N SGH S +  +++S  V  NI+Y
Sbjct: 72  CEVLVLSYKQRCNRNSSGHISYTLNTSISWTVGRNILY 109


>SB_27542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 457 CIILPFSLKFLTSNNCSGHESNSYQSTLSIVVTSNIIY 570
           C +L  S K   + N SGH S +  +++S  V  NI+Y
Sbjct: 120 CEVLVLSYKQRCNRNSSGHISYTLNTSISWTVGRNILY 157


>SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)
          Length = 409

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 457 CIILPFSLKFLTSNNCSGHESNSYQSTLSIVVTSNIIY 570
           C +L  S K   + N SGH S +  +++S  V  NI+Y
Sbjct: 261 CEVLVLSYKQRCNRNSSGHISYTLNTSISWTVGRNILY 298


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 79  NVNLTSEEESQCSNDSLTVPGVSEFAP 159
           N  LTS + S C NDS+T+   SE  P
Sbjct: 768 NTQLTSTKTSACVNDSITLNCTSEAQP 794



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 79   NVNLTSEEESQCSNDSLTVPGVSEFAP 159
            N  LTS + S C NDS+T+   SE  P
Sbjct: 1385 NTQLTSTKTSACVNDSITLNCTSEAQP 1411


>SB_15079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 444 YLQISKTKKKHFNARTTLTPLEIK 373
           YL + K K   F A TT++P EIK
Sbjct: 336 YLAVRKHKANLFQANTTISPAEIK 359


>SB_10278| Best HMM Match : WH2 (HMM E-Value=6.6)
          Length = 69

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 86  ISLLKKNLSVPTIL*QFREYRSLHRCQARRSLPGMKVSQNR 208
           I +  KN S+ +      E R LH+ Q +R+ P  K  +NR
Sbjct: 27  IEICYKNNSLVSTSSLLAEIRQLHKLQQKRTQPQQKAKKNR 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,349,441
Number of Sequences: 59808
Number of extensions: 395239
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)