Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F17
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-12|CAA80188.1|  161|Caenorhabditis elegans Hypothetical p...    38   0.005
AY324109-1|AAP85302.1|  161|Caenorhabditis elegans LIN-52 protein.     38   0.005
Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical p...    28   7.8  
U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.        28   7.8  
U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3...    28   7.8  

>Z22181-12|CAA80188.1|  161|Caenorhabditis elegans Hypothetical
           protein ZK632.13 protein.
          Length = 161

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 166 GTQEPSWNEGLTKQDYTYMQQLGTLTASGLIMEVKKLHDLAYQLGLEEAKEMTRGKYLNI 345
           G + P  N    K+D   +  +    A  +   ++ + +  Y LG+EEA++  RGK LN+
Sbjct: 74  GYESPYKNISFLKEDAVTVNTMSHCPADDIAKLIRNIQNSVYTLGIEEARQCRRGKLLNV 133


>AY324109-1|AAP85302.1|  161|Caenorhabditis elegans LIN-52 protein.
          Length = 161

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 166 GTQEPSWNEGLTKQDYTYMQQLGTLTASGLIMEVKKLHDLAYQLGLEEAKEMTRGKYLNI 345
           G + P  N    K+D   +  +    A  +   ++ + +  Y LG+EEA++  RGK LN+
Sbjct: 74  GYESPYKNISFLKEDAVTVNTMSHCPADDIAKLIRNIQNSVYTLGIEEARQCRRGKLLNV 133


>Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 157 PMPGTQEPSWNEGLTKQDYTYMQQLG 234
           P PG QEP  +E ++K D T +++ G
Sbjct: 351 PQPGEQEPMRDESVSKSDDTIIEKEG 376


>Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 157 PMPGTQEPSWNEGLTKQDYTYMQQLG 234
           P PG QEP  +E ++K D T +++ G
Sbjct: 351 PQPGEQEPMRDESVSKSDDTIIEKEG 376


>U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 593 SHLCKFQFHLNFALLQSNFNDS 658
           S LC F+F+L F +L+ + NDS
Sbjct: 306 SQLCVFEFNLFFQMLEQSCNDS 327


>U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3
           protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 593 SHLCKFQFHLNFALLQSNFNDS 658
           S LC F+F+L F +L+ + NDS
Sbjct: 306 SQLCVFEFNLFFQMLEQSCNDS 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,438,121
Number of Sequences: 27780
Number of extensions: 309861
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)