Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F16
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.3  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   8.3  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    25   8.3  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 595 FTADG-ETTHSLQALSPPESVTYSRSLSGDEXGVL 696
           +  DG   THSL+    P S+ YS+   GD+ G L
Sbjct: 552 YCQDGISLTHSLKLTDIPRSIVYSQKY-GDDGGTL 585


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 58  SFVFQSCFSFAPLSSLAFGFXKSPLCFCILKS 153
           S+ FQS      L   +F F   P+C C+L S
Sbjct: 427 SYPFQSLAFIVCLKYCSFYFFIGPICICLLGS 458


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 309 VNLLHSKRKGIFIHPTAMYRNNL 377
           V LL SK K +F+HPT+  ++N+
Sbjct: 29  VALLFSKSK-VFVHPTSKMKDNI 50


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 478 RLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAFYKKFTADGETTHSLQALSPPES-- 651
           RL+   +A  I+  ++ ++G     +  +A        +FTA      SLQ+  PP+   
Sbjct: 142 RLKGFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNSIKQSLQSRLPPDEKL 201

Query: 652 VTYSRSLSGDEXGVL 696
            T +  L G   G++
Sbjct: 202 STVTTFLVGSVAGII 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,400
Number of Sequences: 5004
Number of extensions: 59154
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)