Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F16
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24632| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_23357| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_24632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 20/74 (27%)
 Frame = +1

Query: 562 MAGSEKAFYKKFTADGETTHSLQALSP--------------------PESVTYSRSLSGD 681
           MAG++K  YK    +G   + LQALSP                    P+ V    + S D
Sbjct: 1   MAGNDKKLYKSLN-EGSAPNDLQALSPSQTTQMPLSVSPTHNPVVVYPDRVRTLSTSSQD 59

Query: 682 EXGVLCDTISRKTL 723
               LCDTISRKTL
Sbjct: 60  GEATLCDTISRKTL 73


>SB_23357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 146 RMQKHNGDXQKPKAREDSGAKEKHDWKTNDLMSETSLXXAKQ 21
           + Q+   + +K   R DSG+  K +W+ N+L +       KQ
Sbjct: 166 KRQRRKSERRKTTHRRDSGSNGKINWQENNLRARDIFSFKKQ 207


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +1

Query: 472 SGRLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAFYKKFTADGETTHSLQALSPPES 651
           SG++  ++R    L GD   Q     YSC  +  ++    K +  G  TH+   L P +S
Sbjct: 676 SGQM-GVNREFQSLTGDDRAQ-----YSCSPSADQQPLKLKLSMSGYNTHNPLPLLPNDS 729

Query: 652 VTYSRSLSGDEXG 690
                 LS DE G
Sbjct: 730 ---DLDLSDDELG 739


>SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 411 TSLLIG*FEQNKIRENETIGKWSFGSIKQSSVYSEWRQCCTRPR 542
           TSL+I   + +++ ++E IGK   G +   +    W      PR
Sbjct: 284 TSLIISVLDYDRVGKSEMIGKCVVGELSSGADLRHWADMLASPR 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,138,875
Number of Sequences: 59808
Number of extensions: 426967
Number of successful extensions: 990
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)