Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F15
(660 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 261 1e-68
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 248 9e-65
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 229 5e-59
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 225 7e-58
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 221 1e-56
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 216 4e-55
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 213 2e-54
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 213 3e-54
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 209 4e-53
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 207 2e-52
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 200 2e-50
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 196 4e-49
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 195 7e-49
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 192 8e-48
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 185 7e-46
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 185 7e-46
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 185 7e-46
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 182 7e-45
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 180 2e-44
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 180 2e-44
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 174 2e-42
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 167 2e-40
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 165 6e-40
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 165 6e-40
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 165 6e-40
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 165 1e-39
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 164 2e-39
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 159 4e-38
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 155 7e-37
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 144 2e-33
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 142 7e-33
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 135 8e-31
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 133 3e-30
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 132 7e-30
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 129 5e-29
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 110 3e-23
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 109 6e-23
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 109 6e-23
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 108 1e-22
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 106 4e-22
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 102 7e-21
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 98 1e-19
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 94 2e-18
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 94 3e-18
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 92 9e-18
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 92 1e-17
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 91 2e-17
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 90 4e-17
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 90 5e-17
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 90 5e-17
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 89 1e-16
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 87 3e-16
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 85 2e-15
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 83 4e-15
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 83 4e-15
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 83 4e-15
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 81 2e-14
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 81 2e-14
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 81 2e-14
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 81 2e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 2e-14
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 79 7e-14
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 77 4e-13
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 75 2e-12
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 74 4e-12
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 74 4e-12
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 73 6e-12
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 73 8e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 8e-12
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 73 8e-12
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 73 8e-12
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 72 1e-11
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 70 4e-11
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 70 6e-11
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 69 8e-11
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 65 2e-09
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 63 5e-09
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 63 7e-09
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 62 9e-09
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 62 2e-08
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 60 4e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 8e-08
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 58 1e-07
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 57 3e-07
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 56 8e-07
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 55 2e-06
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 53 7e-06
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 52 1e-05
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 52 1e-05
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 52 2e-05
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 51 2e-05
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 51 2e-05
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 3e-04
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 47 5e-04
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 46 6e-04
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 46 8e-04
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 46 8e-04
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 43 0.008
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 41 0.023
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 39 0.093
UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1; Pi... 36 0.86
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 36 1.1
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 36 1.1
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 8.0
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 8.0
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 261 bits (639), Expect = 1e-68
Identities = 137/218 (62%), Positives = 147/218 (67%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 184
F G+ +G++GTSLSLLIRAELG PGSLIG DQIYNTIVTAHA
Sbjct: 17 FIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFG 76
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH
Sbjct: 77 NWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHG 136
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
G SVDLAIFSLHLAGISS SFDQ+PLFV AVGITAF
Sbjct: 137 GSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSL 196
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF F
Sbjct: 197 PVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWF 234
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 248 bits (607), Expect = 9e-65
Identities = 130/210 (61%), Positives = 140/210 (66%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++GTSLSLLIR ELG PGSLIG DQIYNTIVTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
GAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAI
Sbjct: 61 GAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
FSLHLAGISS SFDQ+PLF+ AVGITA AGAIT
Sbjct: 121 FSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAIT 180
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+LLTDRNLNTSFFDPAGGGDPILYQHLF F
Sbjct: 181 MLLTDRNLNTSFFDPAGGGDPILYQHLFWF 210
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 229 bits (560), Expect = 5e-59
Identities = 124/216 (57%), Positives = 142/216 (65%)
Frame = -1
Query: 651 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 472
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 471 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 292
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 291 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 112
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 111 L*I*SXPINXPGXPNSARIKRLKDVPMMPXQRPKKK 4
L I S PI PG PNSARIK L DVP MP PK K
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMK 214
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 225 bits (550), Expect = 7e-58
Identities = 118/214 (55%), Positives = 133/214 (62%)
Frame = +2
Query: 11 LGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 190
LG+ SG+IGT+LSLLIR ELG PGS IG DQ+YN +VTAHA N
Sbjct: 5 LGIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNW 64
Query: 191 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 370
LVPL+LGAPD+AFPR+NN+ F VE+GAGTG TVYPPLS N AH G
Sbjct: 65 LVPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGP 124
Query: 371 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 550
SVDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 125 SVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPV 184
Query: 551 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 185 LAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 221 bits (540), Expect = 1e-56
Identities = 120/215 (55%), Positives = 135/215 (62%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
G +G+IGT+LSLLIRAELG PG+L+G DQIYN IVTAHA N L
Sbjct: 24 GAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWL 83
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 84 VPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGAS 143
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 144 VDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVL 203
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F
Sbjct: 204 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWF 238
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 216 bits (527), Expect = 4e-55
Identities = 115/215 (53%), Positives = 132/215 (61%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
G +G++GT+LSLLIRAEL PG+L+G DQIYN IVTAHA N L
Sbjct: 23 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWL 82
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVL 202
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWF 237
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 213 bits (521), Expect = 2e-54
Identities = 113/215 (52%), Positives = 132/215 (61%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
G +G++GT+LSLLIRAELG PG+L+G D IYN IVTAHA N L
Sbjct: 23 GAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWL 82
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
VPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPPL+ N +H G S
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGAS 142
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVL 202
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWF 237
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 213 bits (520), Expect = 3e-54
Identities = 113/215 (52%), Positives = 132/215 (61%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
G +G++GT+LSLLIRAEL PG+L+G DQIYN IVTAHA N L
Sbjct: 23 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWL 82
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVL 202
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWF 237
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 209 bits (511), Expect = 4e-53
Identities = 110/215 (51%), Positives = 130/215 (60%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
G SG IGT+ S+LIR EL +PGS++G D +YN IVTAHA N
Sbjct: 24 GALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWF 83
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPPL+S AH G S
Sbjct: 84 VPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGS 143
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 144 VDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVL 203
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF F
Sbjct: 204 AGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWF 238
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 207 bits (505), Expect = 2e-52
Identities = 108/218 (49%), Positives = 131/218 (60%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 184
F G+ SG++G S+SL+IR ELG PGSLIG DQIYN+IVT+HA
Sbjct: 4 FMFGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFG 63
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N L+PL+LG+PD++FPR+NN+ F + G GTG TVYPPLS + H
Sbjct: 64 NWLIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHG 123
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
G SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 124 GMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSL 183
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF F
Sbjct: 184 PVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWF 221
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 200 bits (489), Expect = 2e-50
Identities = 105/220 (47%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGSLI--GXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F G +G++GT S+LIR EL PG I G Q+YN ++TAHA
Sbjct: 21 FIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGG 80
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 358
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVYPPLS +
Sbjct: 81 FGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITS 140
Query: 359 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 538
H G +VDLAIFSLHL+G+SS + +LPLFV +V +TAF
Sbjct: 141 HSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLL 200
Query: 539 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF F
Sbjct: 201 SLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWF 240
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 196 bits (478), Expect = 4e-49
Identities = 107/214 (50%), Positives = 126/214 (58%), Gaps = 2/214 (0%)
Frame = +2
Query: 23 SGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 196
+ +IGT+ S+LIR EL PG L G Q+YN I+TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 197 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 376
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 377 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 556
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 557 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
GAIT+LLTDRN NTSF+DPAGGGDPILYQHLF F
Sbjct: 204 GAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWF 237
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 195 bits (476), Expect = 7e-49
Identities = 106/212 (50%), Positives = 125/212 (58%), Gaps = 2/212 (0%)
Frame = +2
Query: 23 SGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 196
+ +IGT+ S+LIR EL PG L G Q+YN I+TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 197 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 376
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 377 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 556
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 557 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
GAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 204 GAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 192 bits (467), Expect = 8e-48
Identities = 102/217 (47%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 187
G SG++G +S+LIR EL P + L+G QIYN ++TAHA N
Sbjct: 29 GAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGN 88
Query: 188 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 367
LVP+++G+PD+AFPR+NNI F +VE G GTG TVYPPLSS +H G
Sbjct: 89 WLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSG 148
Query: 368 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 547
+VDLAIFSLH++G SS S ++PLFV ++ +TAF
Sbjct: 149 GAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVP 208
Query: 548 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF F
Sbjct: 209 VLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWF 245
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 185 bits (451), Expect = 7e-46
Identities = 101/200 (50%), Positives = 118/200 (59%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
G +G++GT+LSLLIRAEL PG+L+G DQIYN IVTAHA N L
Sbjct: 12 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWL 71
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPPL+ N+AH G S
Sbjct: 72 IPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGAS 131
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 132 VDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVL 191
Query: 554 AGAITILLTDRNLNTSFFDP 613
A IT+LLTDRNLNT+FFDP
Sbjct: 192 AAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 185 bits (451), Expect = 7e-46
Identities = 102/220 (46%), Positives = 125/220 (56%), Gaps = 2/220 (0%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F L + SG+ GT++SL+IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 358
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 359 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 538
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 539 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF F
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWF 238
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 185 bits (451), Expect = 7e-46
Identities = 102/220 (46%), Positives = 125/220 (56%), Gaps = 2/220 (0%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F L + SG+ GT++SL+IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 358
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 359 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 538
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 539 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF F
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWF 238
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 182 bits (443), Expect = 7e-45
Identities = 100/220 (45%), Positives = 124/220 (56%), Gaps = 2/220 (0%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F L L SG+ G+++S++IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGG 78
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 358
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 359 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 538
H G SVDLAIFSLHL ISS S ++PLFV A+ ITAF
Sbjct: 139 HSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLL 198
Query: 539 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+ IT+LL DRN NTSFF+ AGGGDPI YQH F F
Sbjct: 199 SLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWF 238
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 180 bits (439), Expect = 2e-44
Identities = 99/220 (45%), Positives = 124/220 (56%), Gaps = 2/220 (0%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F L L SG+ GT++SL+IR EL PG L G +Q++N +V HA
Sbjct: 19 FLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGG 78
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 358
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYPPL+S A
Sbjct: 79 FGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQA 138
Query: 359 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 538
H G SVDLAIF+LH+ ISS + +LPLFV A+ ITA
Sbjct: 139 HSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLL 198
Query: 539 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+ +T+LL DRN NTSFF+ AGGGDPILY+HLF F
Sbjct: 199 TLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWF 238
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 180 bits (439), Expect = 2e-44
Identities = 100/215 (46%), Positives = 120/215 (55%), Gaps = 1/215 (0%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELGNPG-SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
L +G+IGT+ S+LIR EL PG I +Q+YN+I+TAHA N L
Sbjct: 24 LFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFL 83
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
+PL LG PD+ FPR+NNI + +ENG GTG T+YPPLS +H G S
Sbjct: 84 LPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPS 143
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VDLAIF LHL+GISS +L LF AV ITA
Sbjct: 144 VDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVL 203
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF F
Sbjct: 204 AGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWF 238
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 174 bits (423), Expect = 2e-42
Identities = 94/215 (43%), Positives = 119/215 (55%), Gaps = 1/215 (0%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELGNPG-SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
L SG++GT+ S+LIR EL PG I +Q+YN+I+T+H N L
Sbjct: 50 LFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFL 109
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 373
+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPPLS +H
Sbjct: 110 LPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMG 169
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VDL IF LHL+GISS +L LF AV ITA
Sbjct: 170 VDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVL 229
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF F
Sbjct: 230 AAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWF 264
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 167 bits (406), Expect = 2e-40
Identities = 92/219 (42%), Positives = 110/219 (50%), Gaps = 2/219 (0%)
Frame = +2
Query: 8 FLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXX 181
F G+ +G + LS+L+R EL PG L G YN I T H
Sbjct: 23 FFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGF 82
Query: 182 XN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 361
N VP+++GAPD++FPR+NN F E G GTG TVYPPLSS +H
Sbjct: 83 GNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSH 142
Query: 362 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 541
G SVDL IFS HL GI S LPLFV +V +T+F
Sbjct: 143 SGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVA 202
Query: 542 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A AIT+LL DRN NTSF+DP GGGD +LYQHLF F
Sbjct: 203 IPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWF 241
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 165 bits (402), Expect = 6e-40
Identities = 88/216 (40%), Positives = 121/216 (56%), Gaps = 2/216 (0%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELG--NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 190
L SG++G SLS+L+R EL NP L+ Q++N ++TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 191 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 370
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 371 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 550
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 551 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A +T+LL DRN NTSFF +GGGDP+LY+H+F F
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWF 255
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 165 bits (402), Expect = 6e-40
Identities = 88/216 (40%), Positives = 121/216 (56%), Gaps = 2/216 (0%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELG--NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 190
L SG++G SLS+L+R EL NP L+ Q++N ++TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 191 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 370
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 371 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 550
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 551 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A +T+LL DRN NTSFF +GGGDP+LY+H+F F
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWF 255
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 165 bits (402), Expect = 6e-40
Identities = 88/216 (40%), Positives = 121/216 (56%), Gaps = 2/216 (0%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELG--NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 190
L SG++G SLS+L+R EL NP L+ Q++N ++TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 191 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 370
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 371 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 550
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 551 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A +T+LL DRN NTSFF +GGGDP+LY+H+F F
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWF 255
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 165 bits (400), Expect = 1e-39
Identities = 87/214 (40%), Positives = 120/214 (56%), Gaps = 2/214 (0%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELG--NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 190
L SG++G SLS+L+R EL NP L+ Q++N ++TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 191 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 370
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 371 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 550
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 551 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
A +T+LL DRN NTSFF +GGGDP+LY+H+F
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIF 253
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 164 bits (398), Expect = 2e-39
Identities = 93/218 (42%), Positives = 115/218 (52%), Gaps = 2/218 (0%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F L S +IGT LS +IR EL N GS L G Q +N ++TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 358
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY PL+ +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQS 143
Query: 359 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 538
H G +VDLAIFSLHL+G SS ++ +PLF AV TA
Sbjct: 144 HSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLL 203
Query: 539 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
A +T+ + DRN NTSFF+ AGGGD +LYQHLF
Sbjct: 204 SLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLF 241
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 159 bits (387), Expect = 4e-38
Identities = 92/219 (42%), Positives = 117/219 (53%), Gaps = 5/219 (2%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELGNPG-SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
L SG++GT+ S+LIR EL PG I +Q+YN+I+TAHA N L
Sbjct: 52 LFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFL 111
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAH 361
+PL++G PD+AFPR+NNI F I+E G GTG T+ YPPLS +H
Sbjct: 112 MPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSH 171
Query: 362 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 541
G SVDLAIF+LHL+G+SS +L LF +
Sbjct: 172 SGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATWSS 224
Query: 542 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
IT++LTDRN NTSFF+ AGGGDPIL+QHLF F
Sbjct: 225 RSRYFLGITMVLTDRNFNTSFFEVAGGGDPILFQHLFWF 263
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 155 bits (377), Expect = 7e-37
Identities = 85/153 (55%), Positives = 94/153 (61%)
Frame = +2
Query: 200 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 379
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 380 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 559
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 560 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWF 156
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 144 bits (348), Expect = 2e-33
Identities = 91/234 (38%), Positives = 119/234 (50%), Gaps = 20/234 (8%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAELGNPG----------------SLIGXDQIYNTIVTAHAXXXXX 148
+ +GIIG ++S L+RAEL PG +L ++N ++TAH
Sbjct: 48 IIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWNVLITAHGLIMVF 107
Query: 149 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVE----NGAG 316
N VP+++GAPD+AFPR+NNI F V NGAG
Sbjct: 108 FMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGSTFVPGGTGNGAG 167
Query: 317 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 496
TG TVY PLS++ G +VD+AI SLH+AG SS + ++PL
Sbjct: 168 TGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMTLHKMPL 226
Query: 497 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
FV +V +TAF A AIT+LLTDRN T+F+D AGGGDP LYQHLF F
Sbjct: 227 FVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELYQHLFWF 280
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 142 bits (344), Expect = 7e-33
Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 2/202 (0%)
Frame = +2
Query: 59 RAELGNPGSLIGXDQ--IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 232
+A LG L G ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 233 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 412
R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 413 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 592
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 593 NTSFFDPAGGGDPILYQHLF*F 658
T+FFDPAGGGDPIL+QH+F F
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWF 343
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 135 bits (327), Expect = 8e-31
Identities = 76/218 (34%), Positives = 105/218 (48%), Gaps = 2/218 (0%)
Frame = +2
Query: 11 LGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 184
LG +G+ G+ LS+LIR EL +PG G Q+YN+++T H
Sbjct: 31 LGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFG 90
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N ++PL+LGAP++AFPR+N + F + G G+ T YPPLS
Sbjct: 91 NWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQP 149
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
S+D I LH GI S + DQ+ +FV +T+F
Sbjct: 150 ELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSV 209
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AG++ LL DRN NTSF+D GG+P+LYQHLF F
Sbjct: 210 PVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWF 247
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 133 bits (322), Expect = 3e-30
Identities = 78/181 (43%), Positives = 95/181 (52%), Gaps = 2/181 (1%)
Frame = +2
Query: 23 SGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 196
+ +IGT+ S+LIR EL PG L G Q+YN I+TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 197 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 376
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 377 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 556
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 557 G 559
G
Sbjct: 204 G 204
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 132 bits (319), Expect = 7e-30
Identities = 73/218 (33%), Positives = 108/218 (49%), Gaps = 1/218 (0%)
Frame = +2
Query: 8 FLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 187
++GL SG+ G SLS +R EL +PG + +Y++I+T HA N
Sbjct: 23 YMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGN 82
Query: 188 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 367
+PL++ D++ PR+NN+ + G G G T+YPPLS++ G
Sbjct: 83 WFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDG 142
Query: 368 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXX 544
+DLA+FSLH+AG+SS F L P+ + + T+
Sbjct: 143 LPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSV 202
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF F
Sbjct: 203 PVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWF 240
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 129 bits (312), Expect = 5e-29
Identities = 75/218 (34%), Positives = 100/218 (45%), Gaps = 2/218 (0%)
Frame = +2
Query: 11 LGLXSGIIGTSLSLLIRAELG--NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 184
+ + SG +G SL IR EL G L G Q YN ++T+H
Sbjct: 23 VAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLV 82
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N +P++ G PD+ FPR+NN+ F + E G G G T+YP L H
Sbjct: 83 NYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHS 142
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
+ D +F++HL GISS SF LF+ A ITA
Sbjct: 143 SLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITL 202
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AG +T++L DRN NTSF+D GGGD IL+QH+F F
Sbjct: 203 PVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWF 240
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 110 bits (265), Expect = 3e-23
Identities = 62/138 (44%), Positives = 76/138 (55%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 184
F G+ SG++GTSLSL+IR ELG PGSL+ DQ+YN +VTAH
Sbjct: 4 FIFGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFG 63
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N LVPL+LGAPD+AFPR+NN+ F + G + PL
Sbjct: 64 NWLVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISA 121
Query: 365 GRSVDLAIFSLHLAGISS 418
G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 109 bits (262), Expect = 6e-23
Identities = 59/111 (53%), Positives = 70/111 (63%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
G +G+IGT+LSLLIRAELG PG+L+G DQ N IVTAHA N L
Sbjct: 24 GAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWL 83
Query: 194 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 346
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+
Sbjct: 84 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 109 bits (262), Expect = 6e-23
Identities = 73/218 (33%), Positives = 102/218 (46%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 184
F LG+ S ++G S SLL R +L P S++ D +YN VT H
Sbjct: 17 FSLGIFSALLGMSFSLLFRLQLAFP-SILTSD-VYNAFVTLHGLVMVFFAAMPTAIGFFA 74
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N L+P PD+ FPR+N + F ++ + A G T YPPLSS
Sbjct: 75 NLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----L 125
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
SV+ ++FSLHLAGI+S + L LF ++ + +
Sbjct: 126 SPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSL 183
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A IT++LTD++L T F+D GGDP+LYQHLF F
Sbjct: 184 PVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWF 221
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 108 bits (260), Expect = 1e-22
Identities = 75/218 (34%), Positives = 95/218 (43%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 184
F GL G IG LSLLIR L +P + +YN +VT H
Sbjct: 118 FVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFG 177
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N +P+ L D+ PR+N++ G G G T+YPPLS
Sbjct: 178 NYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGS 234
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
G VD +FSLHLAG+SS S + V A T+
Sbjct: 235 GFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSL 289
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A IT+LL DRN T+FF+P+GGGDPIL+QHLF F
Sbjct: 290 PVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWF 327
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 106 bits (255), Expect = 4e-22
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Frame = +2
Query: 26 GIIGTSLSLLIRAELGNPG-SLIGXD--QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 196
G+IG +S+LIR EL G +I D +IYN + T H N L
Sbjct: 32 GMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLY 91
Query: 197 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 376
P++LG D+ +PR+N +E G+GTG T+YPPLS+++++ G +
Sbjct: 92 PVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--I 149
Query: 377 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 556
D IF L AGI+S D++ ++ +T+F
Sbjct: 150 DFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVT 209
Query: 557 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
++ DR+ NT FF+ + GDP+LYQHLF F
Sbjct: 210 AVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWF 243
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 102 bits (245), Expect = 7e-21
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 4/215 (1%)
Frame = +2
Query: 26 GIIGTSLSLLIRAELGNPGSLIGXDQ---IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 196
G G LS+++R EL + I + +YN I T H N +
Sbjct: 29 GSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFL 88
Query: 197 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR-S 373
P++ G+P++A+PRIN+I E G GTG T+YPPLS+++ +
Sbjct: 89 PILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVA 148
Query: 374 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 553
VD+ IF L ++G++S + L + ++ IT+
Sbjct: 149 VDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVL 208
Query: 554 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
G + +LL+D + NT FFDP GDPILYQHLF F
Sbjct: 209 TGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWF 243
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 98.3 bits (234), Expect = 1e-19
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 6/223 (2%)
Frame = +2
Query: 8 FLGLXSGIIGTSLSLLIRAELGNPGSLIGXD----QIYNTIVTAHAXXXXXXXXXXXXXX 175
++G +GI+G +S+LIR EL G I IYN +T H
Sbjct: 27 YMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIG 86
Query: 176 XXXN*LVPLILGAPDIAFPRINNIRF-XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 352
N L+P+++G +++ PR+N I F ++ +G T+YPPLS+
Sbjct: 87 FYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTR 146
Query: 353 IAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 529
A G ++DL++ +H+ GISS +F + ++ ++ +T+
Sbjct: 147 DADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSIL 206
Query: 530 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AIT LL DRN+N++ +D GDP+LYQHLF F
Sbjct: 207 LIGSLPILGVAITGLLLDRNINSTIYDVI--GDPVLYQHLFWF 247
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 94.3 bits (224), Expect = 2e-18
Identities = 73/217 (33%), Positives = 86/217 (39%)
Frame = +2
Query: 8 FLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 187
F + G L R L G +IG QI VTA A
Sbjct: 11 FXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGX 70
Query: 188 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 367
L PL +GAP +A PR+ N+ F + G G VYPP SS +AH
Sbjct: 71 XLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSS 130
Query: 368 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 547
+VDL IF LHLAGISS ++ LF
Sbjct: 131 GAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXP 190
Query: 548 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
A AIT+L R N SFF P G P + F F
Sbjct: 191 VLAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 93.9 bits (223), Expect = 3e-18
Identities = 73/223 (32%), Positives = 101/223 (45%), Gaps = 8/223 (3%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 193
GL + +G + +L+R EL +PG + + YN+++T+H N L
Sbjct: 105 GLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYL 163
Query: 194 VPLILGAPDIAFPRINNIRFXXX--XXXXXXXXXXXIVE-NGAGTG*TVYPPLS-----S 349
+PL++GA D+AFPRIN I F I E A TG T+Y PLS
Sbjct: 164 IPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMG 223
Query: 350 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 529
N A+ G VDL + LHL+G+S+ S+ L +F + +
Sbjct: 224 NQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGL 281
Query: 530 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
AI +LL DRN TSFF AG G IL+QHLF F
Sbjct: 282 ILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWF 322
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 92.3 bits (219), Expect = 9e-18
Identities = 65/211 (30%), Positives = 90/211 (42%), Gaps = 1/211 (0%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++G +LLIR EL PG I YN T H N ++PL+L
Sbjct: 58 LVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLML 117
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
GA D+AFPR+N + ++ G TG T Y P S AH +V +
Sbjct: 118 GAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVL 173
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
F + G SS ++ ++PLFV A+ T+ G +
Sbjct: 174 FGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPVI-GLLL 232
Query: 569 ILLTDRNL-NTSFFDPAGGGDPILYQHLF*F 658
+L+T NL FDPA GGDP+L+QHLF F
Sbjct: 233 VLVTVENLFGFGMFDPARGGDPVLFQHLFWF 263
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 91.9 bits (218), Expect = 1e-17
Identities = 65/209 (31%), Positives = 86/209 (41%)
Frame = +2
Query: 32 IGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 211
IG S + +R EL P ++YN ++T H N L+PL++G
Sbjct: 44 IGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVG 102
Query: 212 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 391
D+AFPR+N + F V G T YPPLS G +L I
Sbjct: 103 TEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWIL 159
Query: 392 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 571
SL L G SS +PLF A+ T+ A A+ +
Sbjct: 160 SLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALIL 219
Query: 572 LLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
L D TSFF+P GGGDP++YQHLF F
Sbjct: 220 LSFDLIAGTSFFNPVGGGDPVVYQHLFWF 248
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 91.5 bits (217), Expect = 2e-17
Identities = 58/194 (29%), Positives = 84/194 (43%)
Frame = +2
Query: 77 PGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 256
PG + + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 257 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 436
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 437 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 616
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 617 GGGDPILYQHLF*F 658
GGDP++YQ++F F
Sbjct: 180 KGGDPLIYQNIFWF 193
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 90.2 bits (214), Expect = 4e-17
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 3/213 (1%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++G L++++R EL P + + +YN + T H N L+P ++
Sbjct: 52 LVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMI 110
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVD 379
GAPD+AFP++N F G A +G YPP+S + + H
Sbjct: 111 GAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEF 170
Query: 380 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 559
L I ++ L+GISS F ++P+FV G
Sbjct: 171 LWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTG 230
Query: 560 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+LL D + TSFF P GGGDP+L+QH F F
Sbjct: 231 GAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWF 263
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 89.8 bits (213), Expect = 5e-17
Identities = 67/232 (28%), Positives = 96/232 (41%), Gaps = 19/232 (8%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNP-------GSLIGXDQ------IYNTIVTAHAXXXXXXX 154
GL ++G +L++LIR + G P G L+ + Y I T H
Sbjct: 42 GLLFLLVGGALAMLIRWQWGFPYRPVPLVGRLLFGESGVIGPATYQQIFTTHGLVMIFFA 101
Query: 155 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TV 331
N L+PL++GA D+AFPR+N F G AG G T
Sbjct: 102 VTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVLASFFAPLGSAGAGWTT 161
Query: 332 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 511
Y PLS+N+ G L + ++ + G+SS ++ +LPL + +
Sbjct: 162 YTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMTYMRLPLTIWGL 221
Query: 512 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQHLF 652
+TA A +LL DR+ T FF GGGDPIL+QHLF
Sbjct: 222 WLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHLF 273
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 89.8 bits (213), Expect = 5e-17
Identities = 60/209 (28%), Positives = 87/209 (41%)
Frame = +2
Query: 32 IGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 211
+G +LLIR EL PG I YN + T H N L+P+++G
Sbjct: 52 LGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIG 111
Query: 212 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 391
A D+AFP++N + F +V+ GA TG T Y P S+ + V L F
Sbjct: 112 AKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAF 170
Query: 392 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 571
L G SS + +LPLFV ++ T+ ++ +
Sbjct: 171 IL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLL 227
Query: 572 LLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+ + FDPA GGDP+L+QH F F
Sbjct: 228 VAVEHAFGWGIFDPARGGDPVLFQHFFWF 256
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 88.6 bits (210), Expect = 1e-16
Identities = 63/210 (30%), Positives = 90/210 (42%), Gaps = 1/210 (0%)
Frame = +2
Query: 32 IGTSLSLLIRAELGNPGS-LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
+G L+LL+R +L P + IG D+ YN I T H LVPL++
Sbjct: 46 LGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMV 103
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
G IAFPR+N + V+ G G Y PLS G+ D+
Sbjct: 104 GTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWA 163
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ +S+ S D++PLFV ++ +T+F A T
Sbjct: 164 QMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIAST 223
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
L+ DR + T FF+PA GGD +L+QHLF F
Sbjct: 224 SLILDRLVGTHFFNPAEGGDVLLWQHLFWF 253
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 87.4 bits (207), Expect = 3e-16
Identities = 57/207 (27%), Positives = 85/207 (41%)
Frame = +2
Query: 32 IGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 211
+G +LL+R +L P + +++N + T H N VPL++G
Sbjct: 49 VGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIG 107
Query: 212 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 391
A D+AFPR+N+ F + + G Y PLSS + VD I
Sbjct: 108 ARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWII 167
Query: 392 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 571
L + GI S S ++PLFV + + A A+ +
Sbjct: 168 GLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAM 227
Query: 572 LLTDRNLNTSFFDPAGGGDPILYQHLF 652
LL DR L ++FFDP GG +L+QH F
Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYF 254
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 84.6 bits (200), Expect = 2e-15
Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 1/205 (0%)
Frame = +2
Query: 47 SLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 226
SLLIR +L P + + YN I+T H N +VPL+LGA D+A
Sbjct: 46 SLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVA 105
Query: 227 FPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 403
PR+N + GA G T Y P S A VD + ++ L
Sbjct: 106 LPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILL 162
Query: 404 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 583
G SS S ++P++V +V + A ++L +
Sbjct: 163 LGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLE 222
Query: 584 RNLNTSFFDPAGGGDPILYQHLF*F 658
R + S+F+PA GGDP+L+Q F F
Sbjct: 223 RKIGLSWFNPAVGGDPVLFQQFFWF 247
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 83.4 bits (197), Expect = 4e-15
Identities = 59/210 (28%), Positives = 84/210 (40%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
+IG +LL+R +LG P + +YN + T H N +VPL++
Sbjct: 47 LIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMI 105
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
GA D+AFPR+N + V G Y PL+ VD I
Sbjct: 106 GARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWI 165
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ L G++S + +++PLFV + AF A
Sbjct: 166 VGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATI 225
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
LL DR+ T FF P GGD +L+QHLF F
Sbjct: 226 QLLFDRHFGTRFFLPNLGGDAVLWQHLFWF 255
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 83.4 bits (197), Expect = 4e-15
Identities = 59/210 (28%), Positives = 86/210 (40%), Gaps = 1/210 (0%)
Frame = +2
Query: 32 IGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 211
+G ++LLIRAEL PG ++ +N + T H N ++PL +G
Sbjct: 55 LGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIG 113
Query: 212 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAI 388
APD+AFPR+N F + GA G T+Y PLS I G D+ I
Sbjct: 114 APDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWI 173
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ GI S + ++P+F + + + A
Sbjct: 174 VGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAAL 233
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+L DR L +DPA GG +L+QHLF F
Sbjct: 234 GVLYDRKLGGHLYDPANGGS-LLWQHLFWF 262
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 83.4 bits (197), Expect = 4e-15
Identities = 49/113 (43%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 23 SGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 196
+ +IGT+ S+LIR EL PG L G Q+YN I+TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 197 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 355
P+++GAPD+AFPR+NNI F VE GAGTG TV LS I
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 81.4 bits (192), Expect = 2e-14
Identities = 49/119 (41%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F L S +IGT LS +IR EL N GS L G Q +N ++TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 355
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV SS +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 81.4 bits (192), Expect = 2e-14
Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 2/205 (0%)
Frame = +2
Query: 50 LLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 229
LL+R EL + +YN ++T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 230 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 403
PRIN I F ++ A T T+Y PLS ++ +VD+ + LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207
Query: 404 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 583
G+S+ + L +F + + A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267
Query: 584 RNLNTSFFDPAGGGDPILYQHLF*F 658
RN T+FF A GGDPI +QHLF F
Sbjct: 268 RNFGTTFFTVA-GGDPIFWQHLFWF 291
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 81.4 bits (192), Expect = 2e-14
Identities = 61/212 (28%), Positives = 88/212 (41%), Gaps = 2/212 (0%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
+I SL+LL R +L P S Y VT H N +VPL +
Sbjct: 37 LIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQI 95
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLA 385
GA D+AFPR+N + + E+GA G T+Y PL++ I G +DLA
Sbjct: 96 GARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLA 155
Query: 386 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 565
++ L +S + ++P+F ++ T
Sbjct: 156 ALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGG 215
Query: 566 TILLTDRNLNTSFF-DPAGGGDPILYQHLF*F 658
+LL DRNL T FF +PAGG +L+ HLF F
Sbjct: 216 ALLLLDRNLGTEFFLNPAGGA--LLWDHLFWF 245
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 81.0 bits (191), Expect = 2e-14
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLI--GXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 187
G +G++GT S+LIR EL PG+ I G Q+YN ++TAHA N
Sbjct: 25 GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGN 84
Query: 188 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 331
VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 85 WFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 2e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 200 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 379
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 380 LAIFS 394
LAI+S
Sbjct: 61 LAIYS 65
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/53 (49%), Positives = 29/53 (54%)
Frame = +1
Query: 499 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILI 657
CM C +Y TCFS S+Y IIN K KY IF W P +STFILI
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILI 149
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 79.4 bits (187), Expect = 7e-14
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 3/222 (1%)
Frame = +2
Query: 2 LFFLG-LXSGIIGTSLSLLIRAELGNPGSLIGXD-QIYNTIVTAHAXXXXXXXXXXXXXX 175
L+ +G + + + +++LIR EL G I D +YNT + H
Sbjct: 20 LYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTG 79
Query: 176 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 355
N +PL++GA D+AFPR+N + + + T YPP S I
Sbjct: 80 FFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-I 138
Query: 356 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 535
H + FS+ L G +S +++L +FV A + AF
Sbjct: 139 THGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQ 195
Query: 536 XXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
G A+T+L D+ + T FFD A GGD + YQ+LF F
Sbjct: 196 LIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWF 237
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 77.0 bits (181), Expect = 4e-13
Identities = 63/210 (30%), Positives = 89/210 (42%), Gaps = 1/210 (0%)
Frame = +2
Query: 32 IGTSLSLLIRAELGNPGS-LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
+G +L+LLIRAEL PG+ I +N + T H N VP+++
Sbjct: 37 LGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMV 95
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
D+A+P++N I F + T PP S I+ G + D+ I
Sbjct: 96 RYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWI 149
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
F L + GISS S Q+PL + ++ A A+
Sbjct: 150 FGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALL 209
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+LLTDR + FF+PA GGDPI Y HLF F
Sbjct: 210 MLLTDRLGVSGFFNPAVGGDPIAYAHLFWF 239
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 74.9 bits (176), Expect = 2e-12
Identities = 52/208 (25%), Positives = 81/208 (38%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++G L++LIRA+L P S + YN + T H L+P +L
Sbjct: 45 VVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLL 103
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
G+ D+AFPR+ F + +G +YPPLSS + G + D +
Sbjct: 104 GSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWL 163
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ IS+ S ++P+F +TA
Sbjct: 164 IGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSI 223
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF 652
+L +R + FF A GGD +L+QHLF
Sbjct: 224 LLELERAFDMPFFQAAAGGDALLWQHLF 251
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 73.7 bits (173), Expect = 4e-12
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 15/201 (7%)
Frame = +2
Query: 101 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 280
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 281 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 448
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 449 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 613
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265
Query: 614 ------AGGGDPILYQHLF*F 658
AGGG P+L+QHLF F
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWF 286
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 73.7 bits (173), Expect = 4e-12
Identities = 53/208 (25%), Positives = 83/208 (39%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++G +L++R +L P + + Y+++ T H N L PL+L
Sbjct: 65 LLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLML 123
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
G+ D+AFPR+ + + G Y PL+S G ++D+
Sbjct: 124 GSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYG 183
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ L GIS+ S D+LP+ V + + A
Sbjct: 184 LGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFL 243
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF 652
+L DRN T FFD A GG P+L+QHLF
Sbjct: 244 LLWLDRNAGTHFFDVAHGGRPLLWQHLF 271
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 72.9 bits (171), Expect = 6e-12
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXX 178
F + G+ GT++S++IR EL PG+ L G Q++N +V HA
Sbjct: 19 FIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 179 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 331
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 79 FGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 72.5 bits (170), Expect = 8e-12
Identities = 51/208 (24%), Positives = 81/208 (38%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
+I +LL+R +L P + + YN + T H L+PL++
Sbjct: 71 LIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMI 129
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
GA D+ FPR+ + + + G +Y PLS++ G S D +
Sbjct: 130 GARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWL 189
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ LA I+S S ++P+ + + TAF
Sbjct: 190 IGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSI 249
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF 652
+L +R L FFD GGDP+L+QHLF
Sbjct: 250 LLEAERLLGLPFFDHTLGGDPLLWQHLF 277
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 8e-12
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +2
Query: 338 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 517
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 518 TAFXXXXXXXXXAGAITILLTDR 586
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 172 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 297
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 72.5 bits (170), Expect = 8e-12
Identities = 51/201 (25%), Positives = 76/201 (37%)
Frame = +2
Query: 50 LLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 229
L++RA+L P + YN I T H N +VPL +GA D+AF
Sbjct: 76 LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134
Query: 230 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 409
P +NN+ F ++ G T Y PL+SN G + + L +AG
Sbjct: 135 PYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAG 194
Query: 410 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 589
I + + ++P+F IT A+ +L DR
Sbjct: 195 IGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRL 254
Query: 590 LNTSFFDPAGGGDPILYQHLF 652
FF GG P+L+ +LF
Sbjct: 255 FGAHFFTLEAGGMPMLWANLF 275
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 72.5 bits (170), Expect = 8e-12
Identities = 45/208 (21%), Positives = 84/208 (40%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++G ++ IR +L P + Q YN ++T H N +VPL +
Sbjct: 40 LVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQI 98
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
GA D++FP +N + F + G T Y LS + +G +D +
Sbjct: 99 GARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFV 156
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
L ++G+ + ++ +LPLF + + +
Sbjct: 157 LGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLA 216
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF 652
+++ DR T+FF+P GG+ ++++HLF
Sbjct: 217 LMMLDRLFGTNFFNPELGGNTVIWEHLF 244
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 72.1 bits (169), Expect = 1e-11
Identities = 65/227 (28%), Positives = 91/227 (40%), Gaps = 16/227 (7%)
Frame = +2
Query: 26 GIIGTSLSLLIRAELGNPG--SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVP 199
G++ LS L+R +LG PG S I +Q Y +T H N L+P
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQ-YLQFITMHGMIMVIYLLTALFLGGFGNYLIP 111
Query: 200 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGR 370
L++GA D+ FP +N + + V G G G T+YPP + S +
Sbjct: 112 LMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDW 171
Query: 371 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXX 547
+ L + SL L I + +LPL V + T
Sbjct: 172 GIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPA 231
Query: 548 XXAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*F 658
G++ +LL DR L TSFF P GGG P+L+QHLF F
Sbjct: 232 LFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWF 277
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 70.1 bits (164), Expect = 4e-11
Identities = 53/210 (25%), Positives = 81/210 (38%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
I+G L+LL+R +L P + + YN + + H ++PL+L
Sbjct: 52 ILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLML 110
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
G D+ FPR+N + ++ G YPPL+ G +D
Sbjct: 111 GTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYT 170
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ IS+ S +++P+FV AV + +F A
Sbjct: 171 TVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASL 230
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+L DR FF A GDPIL+QHLF F
Sbjct: 231 MLALDRMAGMHFFT-AASGDPILWQHLFWF 259
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 69.7 bits (163), Expect = 6e-11
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Frame = +2
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 361
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 362 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 541
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 542 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*F 658
A +LL +R+L FF DPA GDP L+QH+F F
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWF 247
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 69.3 bits (162), Expect = 8e-11
Identities = 50/208 (24%), Positives = 82/208 (39%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
+IG L++LIRA+L +P S + Y + T H L+P +L
Sbjct: 45 LIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKML 103
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
G+ D+A+PR++ F + +G +YPPL+S + G + D +
Sbjct: 104 GSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWL 163
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ IS+ S D++P++ +TA
Sbjct: 164 LGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSI 223
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF 652
+L +R FF A GGD +L+QHLF
Sbjct: 224 LLELERAFGLPFFQVAEGGDSLLWQHLF 251
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 64.9 bits (151), Expect = 2e-09
Identities = 66/247 (26%), Positives = 98/247 (39%), Gaps = 30/247 (12%)
Frame = +2
Query: 8 FLGLXSGIIGTSLSLLIRAELGNPGS-------LIGX---------DQIYNTIVTAHAXX 139
F G+ +IG +SL+ R +LG P ++G + Y +VT H
Sbjct: 53 FTGIFWAVIGGLMSLVFRLQLGFPEMSMEFLRPILGGWITEAGKLEPEFYLALVTMHGTI 112
Query: 140 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 319
N L+PL +GA D+A +N + + +E G +
Sbjct: 113 MVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVIMFASIFLETGPAS 172
Query: 320 G*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ 487
G +YPPLS+ ++ G + + + S+ L IS SF +
Sbjct: 173 GSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITTVINLRVKGMSFTR 232
Query: 488 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----AG------GGDPIL 637
LPL + A ITA A +L+ DR+L TSFF AG GG P+L
Sbjct: 233 LPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALHHQGGSPVL 292
Query: 638 YQHLF*F 658
+QHLF F
Sbjct: 293 FQHLFWF 299
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 63.3 bits (147), Expect = 5e-09
Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 1/211 (0%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNP-GSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLI 205
I+ L L++R +L P L+G D YN I T H L+P +
Sbjct: 55 ILAGILGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQM 112
Query: 206 LGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLA 385
L A D+ FPR++ + G +YPPL+ G + D
Sbjct: 113 LAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFW 172
Query: 386 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 565
+ + IS+ S ++P+F A+ I A A
Sbjct: 173 LLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILAT 232
Query: 566 TILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+L +R+ FF GGDP+L+QHLF F
Sbjct: 233 MLLEIERSFGWPFFTAERGGDPLLWQHLFWF 263
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 62.9 bits (146), Expect = 7e-09
Identities = 49/209 (23%), Positives = 73/209 (34%)
Frame = +2
Query: 32 IGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 211
+G L+L IR +L P + YN ++T HA N +PL LG
Sbjct: 49 LGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLG 108
Query: 212 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 391
D+A PR+N G T Y PL+ + G SV +
Sbjct: 109 VRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAV 168
Query: 392 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 571
L+ G+ S ++P+F ++ T+ A +
Sbjct: 169 ILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALL 226
Query: 572 LLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+ L S F+P GG P+LYQ F F
Sbjct: 227 TYLEIKLGLSMFNPGIGGVPVLYQQFFWF 255
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 62.5 bits (145), Expect = 9e-09
Identities = 47/182 (25%), Positives = 69/182 (37%)
Frame = +2
Query: 107 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 286
Y+ I TAH N +VPL +GA D+AFP +N++ F
Sbjct: 100 YDQIFTAHGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVN 158
Query: 287 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 466
V N A TG YPPL+ VD I++L ++GI +
Sbjct: 159 LSLGVGNFARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRA 218
Query: 467 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 646
+P+F GA+ +L DR L+ FF GG+ ++Y +
Sbjct: 219 PGMKLMDMPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLN 278
Query: 647 LF 652
LF
Sbjct: 279 LF 280
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 61.7 bits (143), Expect = 2e-08
Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 4/212 (1%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++G + ++R +L PG + + +N + T HA N +PL++
Sbjct: 45 LVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMI 103
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSV 376
GA D+AFPR+N + ++ G G Y L+S G
Sbjct: 104 GARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGP 163
Query: 377 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 556
D L L GI + + ++P+FV +T+
Sbjct: 164 DFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVT 223
Query: 557 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
A+ +L+ DR +FF+ GG + YQHLF
Sbjct: 224 VALIMLMFDRTFAANFFEVLRGGSVVFYQHLF 255
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 60.5 bits (140), Expect = 4e-08
Identities = 46/182 (25%), Positives = 67/182 (36%)
Frame = +2
Query: 107 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 286
Y+ I TAH N VPL +GA D+AFP +N++ F
Sbjct: 99 YDQIFTAHGVIMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVN 157
Query: 287 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 466
V A TG YPPL+ G VD I++L L+G+ +
Sbjct: 158 ISLGVGEFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRA 217
Query: 467 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 646
+P+F A+ +L DR L+ F GG+P++Y +
Sbjct: 218 PGMKLMDMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVN 277
Query: 647 LF 652
LF
Sbjct: 278 LF 279
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 8e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 296 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 418
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 58.4 bits (135), Expect = 1e-07
Identities = 58/217 (26%), Positives = 85/217 (39%), Gaps = 1/217 (0%)
Frame = +2
Query: 11 LGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 190
LG+ + IIG+ + LIR +L +L D Y VT H N
Sbjct: 26 LGIVALIIGSVNAALIRDQLSF-NNLNAVD--YYDAVTLHGIFMIFFVVMPLSTGFA-NY 81
Query: 191 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAHRG 367
LVP ++GA D+ +P+IN + F ++ G +Y PLS + G
Sbjct: 82 LVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVNYG 140
Query: 368 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 547
+L +L L+G+SS + ++PLFV TA
Sbjct: 141 LGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIAMP 198
Query: 548 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+ +R T FFD A GG P+L+Q LF F
Sbjct: 199 SLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWF 235
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 57.2 bits (132), Expect = 3e-07
Identities = 44/203 (21%), Positives = 75/203 (36%)
Frame = +2
Query: 44 LSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 223
L++L+R +L PG+ +N T H L+P +LGA D+
Sbjct: 78 LAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDL 136
Query: 224 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 403
FPR++ + + + +G +YPPL++ G D+ + L
Sbjct: 137 PFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSF 194
Query: 404 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 583
++S + +PL+ V + + +
Sbjct: 195 IEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEME 254
Query: 584 RNLNTSFFDPAGGGDPILYQHLF 652
R + FFDP GGDP+L+QHLF
Sbjct: 255 RGFDWPFFDPERGGDPLLWQHLF 277
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 56.0 bits (129), Expect = 8e-07
Identities = 47/200 (23%), Positives = 71/200 (35%), Gaps = 14/200 (7%)
Frame = +2
Query: 101 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 280
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 281 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 451
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 452 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA----- 616
+F +LP+ + + ITA + + DR T FF P+
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 617 ------GGGDPILYQHLF*F 658
GGG P+L+QHLF F
Sbjct: 270 NAAPTVGGGQPLLWQHLFWF 289
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 54.8 bits (126), Expect = 2e-06
Identities = 45/210 (21%), Positives = 78/210 (37%)
Frame = +2
Query: 29 IIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 208
++ ++L++R +L + +YN + T H L+P +L
Sbjct: 114 VLAGIVALMMRTQLAVAENDFIGPALYNQLFTMHGTVMMFLFAVPAVEAMGIL-LLPNML 172
Query: 209 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 388
GA D+ FPR++ F V G + PPL++ G + D +
Sbjct: 173 GARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGYNADFWL 232
Query: 389 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 568
+ IS+ + ++P+F A+ + A A
Sbjct: 233 LGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPAVILATA 292
Query: 569 ILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
+L +R + FF GGDP+L+QHLF F
Sbjct: 293 LLELERAFHWPFFAAHLGGDPLLWQHLFWF 322
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 52.8 bits (121), Expect = 7e-06
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHA 133
F + SG+IG+S+S+LIR EL GS++ +QIYNT+VT+HA
Sbjct: 4 FIFAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 40.3 bits (90), Expect = 0.040
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +2
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 545 XXXAGAITILLTDRNLNT 598
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 52.0 bits (119), Expect = 1e-05
Identities = 40/156 (25%), Positives = 59/156 (37%)
Frame = +2
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
L DR L+ FF GG+ + + ++F
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMF 299
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 52.0 bits (119), Expect = 1e-05
Identities = 36/155 (23%), Positives = 61/155 (39%)
Frame = +2
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHL 649
+ + DR L+T F+ GG +LY +L
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINL 273
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 51.6 bits (118), Expect = 2e-05
Identities = 51/212 (24%), Positives = 80/212 (37%), Gaps = 16/212 (7%)
Frame = +2
Query: 71 GNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 250
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 251 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 415
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 416 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 595
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 596 TSFFDPA-----------GGGDPILYQHLF*F 658
TSFF P+ GGG +L+QHLF F
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWF 285
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 51.2 bits (117), Expect = 2e-05
Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 2/204 (0%)
Frame = +2
Query: 2 LFFLGLXSGIIGTSLSLLIRAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXX 181
LFFL + G L+LL R EL + G+ + YN V+ H
Sbjct: 34 LFFL-----VFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA 88
Query: 182 XN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS--SNI 355
N LVPL +GA D+AFPR+N + + G T+Y PL+ + I
Sbjct: 89 -NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYI 147
Query: 356 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 535
G + +L + + +P+F ++ +T +
Sbjct: 148 PGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMML 207
Query: 536 XXXXXXAGAITILLTDRNLNTSFF 607
A+ IL +D L T++F
Sbjct: 208 FAFAALLAALMILASDHILGTTYF 231
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 51.2 bits (117), Expect = 2e-05
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = +2
Query: 320 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 490
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 491 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 658
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF F
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWF 398
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 FLGLXSGIIGTSLSLLIRAELGNPGSLI--GXDQIYNTIVTAHAXXXXXXXXXXXXXXXX 181
+ + +G+ G +L+ +IR EL +P S G Y +VTAH
Sbjct: 69 YFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGF 128
Query: 182 XN*LVPLILGAPDIAFPRINNIRF 253
N L+P +G+ D+A+PR+N+I F
Sbjct: 129 ANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 502 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 654
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 3e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +1
Query: 178 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 357
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 358 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 537
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 538 XTTCFSWSYYNIINRSKLKY 597
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 46.8 bits (106), Expect = 5e-04
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 1/155 (0%)
Frame = +2
Query: 191 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 367
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 368 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 547
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 548 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
G +LL ++ S++ GG +++++LF
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLF 264
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 46.4 bits (105), Expect = 6e-04
Identities = 36/156 (23%), Positives = 59/156 (37%)
Frame = +2
Query: 185 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 364
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 365 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 544
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 545 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 652
A+ +L DR L T FF GG+ +LY +LF
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLF 298
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 46.0 bits (104), Expect = 8e-04
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 482 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHL 649
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYM 67
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 46.0 bits (104), Expect = 8e-04
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTAHA 133
F L + SG+ GT++SL+IR EL PGS L G Q++N +V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 42.7 bits (96), Expect = 0.008
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 587 NLNTSFFDPAGGGDPILYQHLF*F 658
N T+FFDPAGGGD IL+QHLF F
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXF 214
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 41.1 bits (92), Expect = 0.023
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIV 121
F L + SG+ GT++SL+IR EL PGS L G Q++N +V
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 39.1 bits (87), Expect = 0.093
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 5 FFLGLXSGIIGTSLSLLIRAELGNPGS--LIGXDQIYNTIVTA 127
F L + SG+ GT++SL+IR EL PGS L G Q++N T+
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1;
Pichia guilliermondii|Rep: Cytochrome c oxidase subunit
1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 168
Score = 35.9 bits (79), Expect = 0.86
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 17 LXSGIIGTSLSLLIRAEL--GNPGSLIGXDQIYNTIVTAHA 133
+ + ++GT +S++IR EL GN G +Q YN ++T HA
Sbjct: 1 MIASMVGTGMSVIIRMELSSGNSQFFHGNNQAYNVLITGHA 41
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 35.5 bits (78), Expect = 1.1
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLI--GXDQIYN 112
G +G++GT S+LIR EL PG+ I G Q+YN
Sbjct: 25 GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 35.5 bits (78), Expect = 1.1
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 14 GLXSGIIGTSLSLLIRAELGNPGSLI--GXDQIYN 112
G +G++GT S+LIR EL PG+ I G Q+YN
Sbjct: 25 GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 8.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 585 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 463
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 8.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 639 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 502
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,954,649
Number of Sequences: 1657284
Number of extensions: 7405913
Number of successful extensions: 17897
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 16313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17605
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -